Results 21 - 29 of 29 are showing below:
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| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| MIMAT0003718 | ebv-miR-BART19 | -40.2 | NC_007605.1 | - | 133560 | 0.66 | 1 |
|
Target: 5'- gGCGUUCCCGgugAGCcGAguGAACGg -3' miRNA: 3'- -CGUAAGGGU---UCGuUUguUUUGU- -5' |
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| MIMAT0003718 | ebv-miR-BART19 | -40.2 | NC_007605.1 | - | 138799 | 0.68 | 1 |
|
Target: 5'- aGUAUUCUgAGGCAGACAuuuuGCAc -3' miRNA: 3'- -CGUAAGGgUUCGUUUGUuu--UGU- -5' |
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| MIMAT0003718 | ebv-miR-BART19 | -40.2 | NC_007605.1 | + | 148067 | 0.69 | 1 |
|
Target: 5'- aCAUUCCCc-GCAAACAuGACAu -3' miRNA: 3'- cGUAAGGGuuCGUUUGUuUUGU- -5' |
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| MIMAT0003718 | ebv-miR-BART19 | -40.2 | NC_007605.1 | - | 148297 | 1.01 | 0.176453 |
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Target: 5'- aGCAUUCCCAAGCAAACAAAACAu -3' miRNA: 3'- -CGUAAGGGUUCGUUUGUUUUGU- -5' |
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| MIMAT0003718 | ebv-miR-BART19 | -40.2 | NC_007605.1 | - | 148606 | 0.69 | 1 |
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Target: 5'- aGCcgUCCCuGGCAAguuACAGAGCc -3' miRNA: 3'- -CGuaAGGGuUCGUU---UGUUUUGu -5' |
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| MIMAT0003718 | ebv-miR-BART19 | -40.2 | NC_007605.1 | - | 148657 | 0.66 | 1 |
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Target: 5'- ---cUCCCGAGUAAcCAAAGCGc -3' miRNA: 3'- cguaAGGGUUCGUUuGUUUUGU- -5' |
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| MIMAT0003718 | ebv-miR-BART19 | -40.2 | NC_007605.1 | - | 153766 | 0.67 | 1 |
|
Target: 5'- gGCGgaugCCCGGGUAAAgGAGGCGg -3' miRNA: 3'- -CGUaa--GGGUUCGUUUgUUUUGU- -5' |
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| MIMAT0003718 | ebv-miR-BART19 | -40.2 | NC_007605.1 | + | 159820 | 0.8 | 0.960048 |
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Target: 5'- cGC--UCCCGGGCAAACAGGGCAg -3' miRNA: 3'- -CGuaAGGGUUCGUUUGUUUUGU- -5' |
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| MIMAT0003718 | ebv-miR-BART19 | -40.2 | NC_007605.1 | + | 167461 | 0.66 | 1 |
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Target: 5'- gGCAUUCCC-AGUAAAUGGAGgGa -3' miRNA: 3'- -CGUAAGGGuUCGUUUGUUUUgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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