miRNA display CGI


Results 21 - 29 of 29 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 101267 0.67 1
Target:  5'- ----aCCCAGGUAAACAAGAUu -3'
miRNA:   3'- cguaaGGGUUCGUUUGUUUUGu -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 104932 0.66 1
Target:  5'- gGCGagaCCCgAGGCAGACAAGGCc -3'
miRNA:   3'- -CGUaa-GGG-UUCGUUUGUUUUGu -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 122490 0.69 0.999999
Target:  5'- ---aUCCCGccgacaAGCGGACAGAGCAg -3'
miRNA:   3'- cguaAGGGU------UCGUUUGUUUUGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 133560 0.66 1
Target:  5'- gGCGUUCCCGgugAGCcGAguGAACGg -3'
miRNA:   3'- -CGUAAGGGU---UCGuUUguUUUGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 138799 0.68 1
Target:  5'- aGUAUUCUgAGGCAGACAuuuuGCAc -3'
miRNA:   3'- -CGUAAGGgUUCGUUUGUuu--UGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 148297 1.01 0.176453
Target:  5'- aGCAUUCCCAAGCAAACAAAACAu -3'
miRNA:   3'- -CGUAAGGGUUCGUUUGUUUUGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 148606 0.69 1
Target:  5'- aGCcgUCCCuGGCAAguuACAGAGCc -3'
miRNA:   3'- -CGuaAGGGuUCGUU---UGUUUUGu -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 148657 0.66 1
Target:  5'- ---cUCCCGAGUAAcCAAAGCGc -3'
miRNA:   3'- cguaAGGGUUCGUUuGUUUUGU- -5'
MIMAT0003718 ebv-miR-BART19 -40.2 NC_007605.1 - 153766 0.67 1
Target:  5'- gGCGgaugCCCGGGUAAAgGAGGCGg -3'
miRNA:   3'- -CGUaa--GGGUUCGUUUgUUUUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.