miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
100 3' -62.4 AC_000006.1 + 19523 0.71 0.112236
Target:  5'- cGGCGgcGGCgGCGGCC-GCUCGucugcgagUCCUGCCu -3'
miRNA:   3'- -UCGU--UCG-CGCCGGcCGAGU--------GGGACGG- -5'
100 3' -62.4 AC_000006.1 + 19574 0.72 0.082264
Target:  5'- uGGC-GGCGCGGCgcgCGGCUCgcaucaugGCCCggcgGCCc -3'
miRNA:   3'- -UCGuUCGCGCCG---GCCGAG--------UGGGa---CGG- -5'
100 3' -62.4 AC_000006.1 + 19778 0.66 0.245654
Target:  5'- gAGUAuaguuGCGCGcGUCGGCgacCACCgaGUCg -3'
miRNA:   3'- -UCGUu----CGCGC-CGGCCGa--GUGGgaCGG- -5'
100 3' -62.4 AC_000006.1 + 21914 1.11 0.000066
Target:  5'- cAGCAAGCGCGGCCGGCUCACCCUGCCg -3'
miRNA:   3'- -UCGUUCGCGCCGGCCGAGUGGGACGG- -5'
100 3' -62.4 AC_000006.1 + 22546 0.66 0.227292
Target:  5'- uAGCAGGUGacccaGGUacgaguugCGGUUUACgCUGCCa -3'
miRNA:   3'- -UCGUUCGCg----CCG--------GCCGAGUGgGACGG- -5'
100 3' -62.4 AC_000006.1 + 22814 0.66 0.258568
Target:  5'- cGC-AGCGCGcugauaaaGuuGGUguaaUCAUCCUGCCc -3'
miRNA:   3'- uCGuUCGCGC--------CggCCG----AGUGGGACGG- -5'
100 3' -62.4 AC_000006.1 + 23397 0.7 0.12901
Target:  5'- aGGCGgccuccaaGGCGC-GCCGGCUCGgC-UGCCa -3'
miRNA:   3'- -UCGU--------UCGCGcCGGCCGAGUgGgACGG- -5'
100 3' -62.4 AC_000006.1 + 23527 0.74 0.063584
Target:  5'- cAGCucGCGCcGCCGGCUCGCgCUcacgGCCu -3'
miRNA:   3'- -UCGuuCGCGcCGGCCGAGUGgGA----CGG- -5'
100 3' -62.4 AC_000006.1 + 25048 0.71 0.109135
Target:  5'- uGGCcccGGGCGC-GCCGGC-CACCCagcgcugGCCg -3'
miRNA:   3'- -UCG---UUCGCGcCGGCCGaGUGGGa------CGG- -5'
100 3' -62.4 AC_000006.1 + 26706 0.71 0.100308
Target:  5'- uGCccGCGgGGCCGGaacCGCCgCUGCCg -3'
miRNA:   3'- uCGuuCGCgCCGGCCga-GUGG-GACGG- -5'
100 3' -62.4 AC_000006.1 + 28757 0.66 0.252043
Target:  5'- uGCucGCGCaaGGgCGGCagACUCUGCUg -3'
miRNA:   3'- uCGuuCGCG--CCgGCCGagUGGGACGG- -5'
100 3' -62.4 AC_000006.1 + 28812 0.7 0.12901
Target:  5'- uGGCcaccAGCGUGGaCCuGgUCACCCUGCa -3'
miRNA:   3'- -UCGu---UCGCGCC-GGcCgAGUGGGACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.