miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
100 3' -62.4 AC_000006.1 + 23527 0.74 0.063584
Target:  5'- cAGCucGCGCcGCCGGCUCGCgCUcacgGCCu -3'
miRNA:   3'- -UCGuuCGCGcCGGCCGAGUGgGA----CGG- -5'
100 3' -62.4 AC_000006.1 + 18254 0.7 0.132633
Target:  5'- cGCcGGCgGCGGUucaGGCcgCugCCUGCCa -3'
miRNA:   3'- uCGuUCG-CGCCGg--CCGa-GugGGACGG- -5'
100 3' -62.4 AC_000006.1 + 17671 0.68 0.17432
Target:  5'- cGCAucuGGcCGCGGCCGcuuCUCGCCCUucgGCg -3'
miRNA:   3'- uCGU---UC-GCGCCGGCc--GAGUGGGA---CGg -5'
100 3' -62.4 AC_000006.1 + 22814 0.66 0.258568
Target:  5'- cGC-AGCGCGcugauaaaGuuGGUguaaUCAUCCUGCCc -3'
miRNA:   3'- uCGuUCGCGC--------CggCCG----AGUGGGACGG- -5'
100 3' -62.4 AC_000006.1 + 28757 0.66 0.252043
Target:  5'- uGCucGCGCaaGGgCGGCagACUCUGCUg -3'
miRNA:   3'- uCGuuCGCG--CCgGCCGagUGGGACGG- -5'
100 3' -62.4 AC_000006.1 + 19778 0.66 0.245654
Target:  5'- gAGUAuaguuGCGCGcGUCGGCgacCACCgaGUCg -3'
miRNA:   3'- -UCGUu----CGCGC-CGGCCGa--GUGGgaCGG- -5'
100 3' -62.4 AC_000006.1 + 18515 0.66 0.23328
Target:  5'- gGGCGccUGCGGCUGGCguagUACCgggUGCCg -3'
miRNA:   3'- -UCGUucGCGCCGGCCGa---GUGGg--ACGG- -5'
100 3' -62.4 AC_000006.1 + 2277 0.66 0.23328
Target:  5'- uGC-AGUGUcgGGCgGGaggCACCCUGCUg -3'
miRNA:   3'- uCGuUCGCG--CCGgCCga-GUGGGACGG- -5'
100 3' -62.4 AC_000006.1 + 22546 0.66 0.227292
Target:  5'- uAGCAGGUGacccaGGUacgaguugCGGUUUACgCUGCCa -3'
miRNA:   3'- -UCGUUCGCg----CCG--------GCCGAGUGgGACGG- -5'
100 3' -62.4 AC_000006.1 + 2078 0.67 0.221434
Target:  5'- -cCAuGUGCuGCUGGCuUUACCCUGCUc -3'
miRNA:   3'- ucGUuCGCGcCGGCCG-AGUGGGACGG- -5'
100 3' -62.4 AC_000006.1 + 17546 0.68 0.179078
Target:  5'- aGGuCAAGgGUGGCgGGUUucauuaCACCCgugGCCa -3'
miRNA:   3'- -UC-GUUCgCGCCGgCCGA------GUGGGa--CGG- -5'
100 3' -62.4 AC_000006.1 + 21914 1.11 0.000066
Target:  5'- cAGCAAGCGCGGCCGGCUCACCCUGCCg -3'
miRNA:   3'- -UCGUUCGCGCCGGCCGAGUGGGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.