miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
10200	3'	-47.5	NC_002665.1	+	47602	0.66	0.998685
	Target:  5'- -uGGAACCAa-----CAUCUCCCAUGg -3' miRNA:   3'- guCUUUGGUacuuacGUAGAGGGUAC- -5'
10200	3'	-47.5	NC_002665.1	+	66619	0.66	0.998685
	Target:  5'- -uGAAGCC-UGGAggguaaCAUCUUCCAUGg -3' miRNA:   3'- guCUUUGGuACUUac----GUAGAGGGUAC- -5'
10200	3'	-47.5	NC_002665.1	+	66905	0.66	0.998297
	Target:  5'- gGGAAGCCAUGAuaggggccgcgacuGcUGCAUUgacuUCCCAg- -3' miRNA:   3'- gUCUUUGGUACU--------------U-ACGUAG----AGGGUac -5'
10200	3'	-47.5	NC_002665.1	+	7027	0.67	0.995046
	Target:  5'- aGGAGACC-UGAAUGUauauaauucauacuAUCUCCaaCAUGg -3' miRNA:   3'- gUCUUUGGuACUUACG--------------UAGAGG--GUAC- -5'
10200	3'	-47.5	NC_002665.1	+	74593	0.68	0.991264
	Target:  5'- aCAGAGAUa---GAUGCGUCUCCUAg- -3' miRNA:   3'- -GUCUUUGguacUUACGUAGAGGGUac -5'
10200	3'	-47.5	NC_002665.1	+	101958	0.81	0.520524
	Target:  5'- aGGGAAUU-UGAGUGUAUCUCCCAUGa -3' miRNA:   3'- gUCUUUGGuACUUACGUAGAGGGUAC- -5'
10200	3'	-47.5	NC_002665.1	+	13157	1.1	0.010459
	Target:  5'- uCAGAAACCAUGAAUGCAUCUCCCAUGg -3' miRNA:   3'- -GUCUUUGGUACUUACGUAGAGGGUAC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home