Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10200 | 3' | -47.5 | NC_002665.1 | + | 47602 | 0.66 | 0.998685 |
Target: 5'- -uGGAACCAa-----CAUCUCCCAUGg -3' miRNA: 3'- guCUUUGGUacuuacGUAGAGGGUAC- -5' |
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10200 | 3' | -47.5 | NC_002665.1 | + | 66619 | 0.66 | 0.998685 |
Target: 5'- -uGAAGCC-UGGAggguaaCAUCUUCCAUGg -3' miRNA: 3'- guCUUUGGuACUUac----GUAGAGGGUAC- -5' |
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10200 | 3' | -47.5 | NC_002665.1 | + | 66905 | 0.66 | 0.998297 |
Target: 5'- gGGAAGCCAUGAuaggggccgcgacuGcUGCAUUgacuUCCCAg- -3' miRNA: 3'- gUCUUUGGUACU--------------U-ACGUAG----AGGGUac -5' |
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10200 | 3' | -47.5 | NC_002665.1 | + | 7027 | 0.67 | 0.995046 |
Target: 5'- aGGAGACC-UGAAUGUauauaauucauacuAUCUCCaaCAUGg -3' miRNA: 3'- gUCUUUGGuACUUACG--------------UAGAGG--GUAC- -5' |
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10200 | 3' | -47.5 | NC_002665.1 | + | 74593 | 0.68 | 0.991264 |
Target: 5'- aCAGAGAUa---GAUGCGUCUCCUAg- -3' miRNA: 3'- -GUCUUUGguacUUACGUAGAGGGUac -5' |
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10200 | 3' | -47.5 | NC_002665.1 | + | 101958 | 0.81 | 0.520524 |
Target: 5'- aGGGAAUU-UGAGUGUAUCUCCCAUGa -3' miRNA: 3'- gUCUUUGGuACUUACGUAGAGGGUAC- -5' |
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10200 | 3' | -47.5 | NC_002665.1 | + | 13157 | 1.1 | 0.010459 |
Target: 5'- uCAGAAACCAUGAAUGCAUCUCCCAUGg -3' miRNA: 3'- -GUCUUUGGUACUUACGUAGAGGGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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