miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10205 3' -55.7 NC_002665.1 + 107643 0.66 0.840854
Target:  5'- gGUUAUGUUGAGG--UAAUAGGUGCCa -3'
miRNA:   3'- aUAGUGUAGCUCCcgGUUGUCCGCGG- -5'
10205 3' -55.7 NC_002665.1 + 77952 0.68 0.7381
Target:  5'- --gUACAUCaGAuGGGUCAAagAGGUGCCa -3'
miRNA:   3'- auaGUGUAG-CU-CCCGGUUg-UCCGCGG- -5'
10205 3' -55.7 NC_002665.1 + 79705 0.68 0.7381
Target:  5'- aUAUCugGggCGGGGGCgG--GGGCGUCa -3'
miRNA:   3'- -AUAGugUa-GCUCCCGgUugUCCGCGG- -5'
10205 3' -55.7 NC_002665.1 + 26470 0.69 0.665676
Target:  5'- --cUACccaaGAGGGCCugaauauuCAGGCGCCu -3'
miRNA:   3'- auaGUGuag-CUCCCGGuu------GUCCGCGG- -5'
10205 3' -55.7 NC_002665.1 + 108362 0.72 0.519397
Target:  5'- aAUC-CAUCgGAGGGCCAucugcauuuACGGG-GCCg -3'
miRNA:   3'- aUAGuGUAG-CUCCCGGU---------UGUCCgCGG- -5'
10205 3' -55.7 NC_002665.1 + 26629 1.1 0.001654
Target:  5'- cUAUCACAUCGAGGGCCAACAGGCGCCu -3'
miRNA:   3'- -AUAGUGUAGCUCCCGGUUGUCCGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.