Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10218 | 3' | -63.4 | NC_002665.1 | + | 108748 | 0.72 | 0.190415 |
Target: 5'- aGCAGCCCUCUgacccugggggAUGccauggauuccacaGCCCUcgUCCCCCACc -3' miRNA: 3'- -UGUCGGGAGG-----------UGC--------------CGGGA--AGGGGGUG- -5' |
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10218 | 3' | -63.4 | NC_002665.1 | + | 32522 | 0.71 | 0.216635 |
Target: 5'- uGCAGCaa-CCAUGGCCCUUaccgCCCCAUa -3' miRNA: 3'- -UGUCGggaGGUGCCGGGAAg---GGGGUG- -5' |
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10218 | 3' | -63.4 | NC_002665.1 | + | 24472 | 0.66 | 0.470303 |
Target: 5'- cCAGCCCUCCucccCCCUcauaUCCUCCAg -3' miRNA: 3'- uGUCGGGAGGugccGGGA----AGGGGGUg -5' |
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10218 | 3' | -63.4 | NC_002665.1 | + | 140 | 1.08 | 0.000397 |
Target: 5'- aACAGCCCUCCACGGCCCUUCCCCCACa -3' miRNA: 3'- -UGUCGGGAGGUGCCGGGAAGGGGGUG- -5' |
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10218 | 3' | -63.4 | NC_002665.1 | + | 64605 | 0.75 | 0.128498 |
Target: 5'- gUAGCCCaggaaacaACGGgCCUUCCCCCACa -3' miRNA: 3'- uGUCGGGagg-----UGCCgGGAAGGGGGUG- -5' |
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10218 | 3' | -63.4 | NC_002665.1 | + | 77461 | 0.73 | 0.182614 |
Target: 5'- cCAGaCCCUgaacuccaauacCCAUGGCCCUUUCCCCc- -3' miRNA: 3'- uGUC-GGGA------------GGUGCCGGGAAGGGGGug -5' |
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10218 | 3' | -63.4 | NC_002665.1 | + | 100186 | 0.7 | 0.249984 |
Target: 5'- cGCGGCag--CACGGUCC-UCCCCCGCa -3' miRNA: 3'- -UGUCGggagGUGCCGGGaAGGGGGUG- -5' |
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10218 | 3' | -63.4 | NC_002665.1 | + | 5434 | 0.67 | 0.39158 |
Target: 5'- gACAcucGCCCUCCcgGgGGUCCaggUCCCCCu- -3' miRNA: 3'- -UGU---CGGGAGG--UgCCGGGa--AGGGGGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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