Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1022 | 3' | -54.4 | NC_000924.1 | + | 251 | 0.67 | 0.695107 |
Target: 5'- gGGCAcucCAGCGCCAGCAuGGuCUACa- -3' miRNA: 3'- gUCGUu--GUCGUGGUUGU-CCuGGUGgu -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 7897 | 0.66 | 0.759431 |
Target: 5'- gGGCAGC--CAgCAACAGG-CCACCc -3' miRNA: 3'- gUCGUUGucGUgGUUGUCCuGGUGGu -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 11930 | 0.72 | 0.426875 |
Target: 5'- uCGGCgAACAGCGCCccguguGGCAGGGCaauCCAg -3' miRNA: 3'- -GUCG-UUGUCGUGG------UUGUCCUGgu-GGU- -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 14132 | 0.71 | 0.435632 |
Target: 5'- gAGCGGCAGCAaguggggaaCAGCAGaagaccuGACCGCCGc -3' miRNA: 3'- gUCGUUGUCGUg--------GUUGUC-------CUGGUGGU- -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 15751 | 0.66 | 0.758392 |
Target: 5'- aCGGUAauuGCAGUaaugaaaGCCAuCAGGGCCGCa- -3' miRNA: 3'- -GUCGU---UGUCG-------UGGUuGUCCUGGUGgu -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 24096 | 0.72 | 0.417268 |
Target: 5'- aGGgAACAcCGCCAGCAGaGCCACCGa -3' miRNA: 3'- gUCgUUGUcGUGGUUGUCcUGGUGGU- -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 27674 | 0.66 | 0.769754 |
Target: 5'- cCAGCcACAGCGCaCcAUAGccaACCGCCAg -3' miRNA: 3'- -GUCGuUGUCGUG-GuUGUCc--UGGUGGU- -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 27686 | 0.66 | 0.72771 |
Target: 5'- aGGCGAaugcCACCAuuacugacauGCAGGugCGCCAg -3' miRNA: 3'- gUCGUUguc-GUGGU----------UGUCCugGUGGU- -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 28315 | 0.72 | 0.389258 |
Target: 5'- aCAGCAGUAGCACCAA-AGGAaaCCAUCAc -3' miRNA: 3'- -GUCGUUGUCGUGGUUgUCCU--GGUGGU- -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 29365 | 0.68 | 0.625169 |
Target: 5'- uGGCugaGACAGCACCAAaacuucgugcugacCGGGaaagaaucaacGCCGCCAg -3' miRNA: 3'- gUCG---UUGUCGUGGUU--------------GUCC-----------UGGUGGU- -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 29943 | 0.68 | 0.617366 |
Target: 5'- -cGUAGCGGUGCCAGCGGuGGCUAUa- -3' miRNA: 3'- guCGUUGUCGUGGUUGUC-CUGGUGgu -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 33174 | 0.69 | 0.551076 |
Target: 5'- gGGCAcauGCAGCugCAcaACGGGAUaauGCCAg -3' miRNA: 3'- gUCGU---UGUCGugGU--UGUCCUGg--UGGU- -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 33831 | 0.66 | 0.748976 |
Target: 5'- aAGCAACGG-GCCgAACAGGaaGCCGCa- -3' miRNA: 3'- gUCGUUGUCgUGG-UUGUCC--UGGUGgu -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 34665 | 0.66 | 0.748976 |
Target: 5'- aCAGCAGgaAGCGCCAaaaGCGGuuUCGCCGg -3' miRNA: 3'- -GUCGUUg-UCGUGGU---UGUCcuGGUGGU- -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 34704 | 0.7 | 0.529417 |
Target: 5'- aAGCAcgaaGCAG-ACCAgcGCGGGugCGCCGg -3' miRNA: 3'- gUCGU----UGUCgUGGU--UGUCCugGUGGU- -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 37982 | 0.67 | 0.706053 |
Target: 5'- gAGCAaauauuacccugACGGCGCUGACAGuuUCACCGg -3' miRNA: 3'- gUCGU------------UGUCGUGGUUGUCcuGGUGGU- -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 38375 | 0.74 | 0.305198 |
Target: 5'- aCAGUgcaaaGACGGCaACCAGCAGGGCgGCUg -3' miRNA: 3'- -GUCG-----UUGUCG-UGGUUGUCCUGgUGGu -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 39527 | 0.67 | 0.684098 |
Target: 5'- -uGCGGCAgGC-CCGGCAGGcCCACa- -3' miRNA: 3'- guCGUUGU-CGuGGUUGUCCuGGUGgu -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 39567 | 0.67 | 0.706053 |
Target: 5'- aCAGguGCGGCagGCCcgGugGGGGCgACCGg -3' miRNA: 3'- -GUCguUGUCG--UGG--UugUCCUGgUGGU- -5' |
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1022 | 3' | -54.4 | NC_000924.1 | + | 46053 | 0.66 | 0.747923 |
Target: 5'- uCAGCAcugagcacagaacGCAGCACCAAaaa-GCCAUCAg -3' miRNA: 3'- -GUCGU-------------UGUCGUGGUUguccUGGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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