miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1022 3' -54.4 NC_000924.1 + 46990 0.68 0.639667
Target:  5'- uGGCAuUAGCGCCGGugcCAGGuguuuuagcACCGCCAc -3'
miRNA:   3'- gUCGUuGUCGUGGUU---GUCC---------UGGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 47695 1.09 0.001218
Target:  5'- cCAGCAACAGCACCAACAGGACCACCAa -3'
miRNA:   3'- -GUCGUUGUCGUGGUUGUCCUGGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 48558 0.74 0.312942
Target:  5'- gAGCGAUAGCcuuAUCAACGGGuAUCGCCAg -3'
miRNA:   3'- gUCGUUGUCG---UGGUUGUCC-UGGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 49665 0.67 0.716924
Target:  5'- uCAGguACAagcGCACCAAuCAGGuuuacacccuucGCCACCc -3'
miRNA:   3'- -GUCguUGU---CGUGGUU-GUCC------------UGGUGGu -5'
1022 3' -54.4 NC_000924.1 + 50348 0.67 0.706053
Target:  5'- cCGGCAACcGCACCGAauGGAgCCcCCAu -3'
miRNA:   3'- -GUCGUUGuCGUGGUUguCCU-GGuGGU- -5'
1022 3' -54.4 NC_000924.1 + 51469 0.78 0.170469
Target:  5'- -cGCGACAGCACCggUacgugaAGGGCUACCGg -3'
miRNA:   3'- guCGUUGUCGUGGuuG------UCCUGGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 56681 0.68 0.628515
Target:  5'- aCGGCAGCacgGGaCGCCGuCAGGucacccGCCGCCAc -3'
miRNA:   3'- -GUCGUUG---UC-GUGGUuGUCC------UGGUGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.