miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1022 3' -54.4 NC_000924.1 + 27686 0.66 0.72771
Target:  5'- aGGCGAaugcCACCAuuacugacauGCAGGugCGCCAg -3'
miRNA:   3'- gUCGUUguc-GUGGU----------UGUCCugGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 46053 0.66 0.747923
Target:  5'- uCAGCAcugagcacagaacGCAGCACCAAaaa-GCCAUCAg -3'
miRNA:   3'- -GUCGU-------------UGUCGUGGUUguccUGGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 33831 0.66 0.748976
Target:  5'- aAGCAACGG-GCCgAACAGGaaGCCGCa- -3'
miRNA:   3'- gUCGUUGUCgUGG-UUGUCC--UGGUGgu -5'
1022 3' -54.4 NC_000924.1 + 34665 0.66 0.748976
Target:  5'- aCAGCAGgaAGCGCCAaaaGCGGuuUCGCCGg -3'
miRNA:   3'- -GUCGUUg-UCGUGGU---UGUCcuGGUGGU- -5'
1022 3' -54.4 NC_000924.1 + 15751 0.66 0.758392
Target:  5'- aCGGUAauuGCAGUaaugaaaGCCAuCAGGGCCGCa- -3'
miRNA:   3'- -GUCGU---UGUCG-------UGGUuGUCCUGGUGgu -5'
1022 3' -54.4 NC_000924.1 + 7897 0.66 0.759431
Target:  5'- gGGCAGC--CAgCAACAGG-CCACCc -3'
miRNA:   3'- gUCGUUGucGUgGUUGUCCuGGUGGu -5'
1022 3' -54.4 NC_000924.1 + 27674 0.66 0.769754
Target:  5'- cCAGCcACAGCGCaCcAUAGccaACCGCCAg -3'
miRNA:   3'- -GUCGuUGUCGUG-GuUGUCc--UGGUGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.