miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10223 3' -51.7 NC_002665.1 + 21232 1.11 0.003623
Target:  5'- uCCAUGAUUGGCUGACUGCCAUGAGGAc -3'
miRNA:   3'- -GGUACUAACCGACUGACGGUACUCCU- -5'
10223 3' -51.7 NC_002665.1 + 66916 0.73 0.708569
Target:  5'- uCCAUGGUUGGCUGg--GCCuUG-GGAu -3'
miRNA:   3'- -GGUACUAACCGACugaCGGuACuCCU- -5'
10223 3' -51.7 NC_002665.1 + 21169 0.7 0.835971
Target:  5'- uCCAUGGUgaUGGaauCUGACaGCCAagGGGGAg -3'
miRNA:   3'- -GGUACUA--ACC---GACUGaCGGUa-CUCCU- -5'
10223 3' -51.7 NC_002665.1 + 101331 0.67 0.944706
Target:  5'- aCAUugucAUUGGCUGuuGCUGCCAUGAu-- -3'
miRNA:   3'- gGUAc---UAACCGAC--UGACGGUACUccu -5'
10223 3' -51.7 NC_002665.1 + 21403 0.67 0.944706
Target:  5'- aCC-UGAUUGGCUaACUGCCuUGAc-- -3'
miRNA:   3'- -GGuACUAACCGAcUGACGGuACUccu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.