miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10283 3' -58.9 NC_002687.1 + 101159 0.66 0.935939
Target:  5'- aGUGGUgUGACCGAaauguCGCCGAU--UGCCAg -3'
miRNA:   3'- -CACCG-GCUGGCU-----GUGGCUAgcACGGU- -5'
10283 3' -58.9 NC_002687.1 + 2732 1.08 0.004631
Target:  5'- cGUGGCCGACCGACACCGAUCGUGCCAc -3'
miRNA:   3'- -CACCGGCUGGCUGUGGCUAGCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 316044 0.71 0.708662
Target:  5'- cUGGCgGugguGCCGAUgguGCCGAUgGUGCCGg -3'
miRNA:   3'- cACCGgC----UGGCUG---UGGCUAgCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 291265 0.7 0.745279
Target:  5'- cGUGGCCGACUGcACuGCCGAagUGaGCCAg -3'
miRNA:   3'- -CACCGGCUGGC-UG-UGGCUa-GCaCGGU- -5'
10283 3' -58.9 NC_002687.1 + 299259 0.7 0.77187
Target:  5'- -cGGCCGACUGGCGCCuGAauuccUUG-GCCGc -3'
miRNA:   3'- caCCGGCUGGCUGUGG-CU-----AGCaCGGU- -5'
10283 3' -58.9 NC_002687.1 + 72924 0.69 0.821956
Target:  5'- cGUGuGCCGacgccgccgccGCCGACacaccGCCGAgcaGUGCCAg -3'
miRNA:   3'- -CAC-CGGC-----------UGGCUG-----UGGCUag-CACGGU- -5'
10283 3' -58.9 NC_002687.1 + 154276 0.69 0.829821
Target:  5'- cGUGGCCGACacgcggugUGACAUUGAUgGUGUgGa -3'
miRNA:   3'- -CACCGGCUG--------GCUGUGGCUAgCACGgU- -5'
10283 3' -58.9 NC_002687.1 + 328257 0.69 0.829821
Target:  5'- uUGGUgGACaaCGuCGgCGAUCGUGCCAc -3'
miRNA:   3'- cACCGgCUG--GCuGUgGCUAGCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 269893 0.68 0.866705
Target:  5'- -gGGUCGAacagccacgccUUGGCACUGGUgGUGCCAa -3'
miRNA:   3'- caCCGGCU-----------GGCUGUGGCUAgCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 268315 0.66 0.919803
Target:  5'- -cGGCCGACCucaaaggcaaccugGAUACCGA--GUGCUu -3'
miRNA:   3'- caCCGGCUGG--------------CUGUGGCUagCACGGu -5'
10283 3' -58.9 NC_002687.1 + 29929 0.67 0.910616
Target:  5'- -aGGCaGGCauCGGCuuuCCGAUCGUGCUg -3'
miRNA:   3'- caCCGgCUG--GCUGu--GGCUAGCACGGu -5'
10283 3' -58.9 NC_002687.1 + 211025 0.67 0.904936
Target:  5'- cGUGGCCGGCCu-CugCGAccaGUGCa- -3'
miRNA:   3'- -CACCGGCUGGcuGugGCUag-CACGgu -5'
10283 3' -58.9 NC_002687.1 + 98160 0.67 0.899054
Target:  5'- -cGGU--GCCGAUgguGCCGGUgGUGCCAg -3'
miRNA:   3'- caCCGgcUGGCUG---UGGCUAgCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 151560 0.67 0.899054
Target:  5'- -aGGCUGcuucucuauUCGACACUcGUCGUGCCGa -3'
miRNA:   3'- caCCGGCu--------GGCUGUGGcUAGCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 215666 0.68 0.880219
Target:  5'- cGUGGCCGucacugucGCCGuCGCCGAgccuaucgcCGUcGCCGa -3'
miRNA:   3'- -CACCGGC--------UGGCuGUGGCUa--------GCA-CGGU- -5'
10283 3' -58.9 NC_002687.1 + 199798 0.66 0.92493
Target:  5'- gGUGGUggCGAUUGGCACCGAgCGUaauuuauuacgacgGCCAc -3'
miRNA:   3'- -CACCG--GCUGGCUGUGGCUaGCA--------------CGGU- -5'
10283 3' -58.9 NC_002687.1 + 312766 0.7 0.745279
Target:  5'- aUGGCCG-CCGuCGCgGAUaccUGUGCCAc -3'
miRNA:   3'- cACCGGCuGGCuGUGgCUA---GCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 2369 0.69 0.829821
Target:  5'- cGUGGCaCGAUCGGugUCGGUCG-GCCAc -3'
miRNA:   3'- -CACCG-GCUGGCUguGGCUAGCaCGGU- -5'
10283 3' -58.9 NC_002687.1 + 298057 0.68 0.866705
Target:  5'- -aGGCCGcgGCCGcCGCCGcgcgCGUGCUu -3'
miRNA:   3'- caCCGGC--UGGCuGUGGCua--GCACGGu -5'
10283 3' -58.9 NC_002687.1 + 87761 0.68 0.873555
Target:  5'- -cGGCCuGAUCGGCGCCGAacagcUCgGUGgCAg -3'
miRNA:   3'- caCCGG-CUGGCUGUGGCU-----AG-CACgGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.