miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10283 3' -58.9 NC_002687.1 + 297990 0.68 0.873555
Target:  5'- -cGGCCGccaccgcuuCCGACuggcgaggcgGCCGcuuUCGUGCCAa -3'
miRNA:   3'- caCCGGCu--------GGCUG----------UGGCu--AGCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 87761 0.68 0.873555
Target:  5'- -cGGCCuGAUCGGCGCCGAacagcUCgGUGgCAg -3'
miRNA:   3'- caCCGG-CUGGCUGUGGCU-----AG-CACgGU- -5'
10283 3' -58.9 NC_002687.1 + 298057 0.68 0.866705
Target:  5'- -aGGCCGcgGCCGcCGCCGcgcgCGUGCUu -3'
miRNA:   3'- caCCGGC--UGGCuGUGGCua--GCACGGu -5'
10283 3' -58.9 NC_002687.1 + 2369 0.69 0.829821
Target:  5'- cGUGGCaCGAUCGGugUCGGUCG-GCCAc -3'
miRNA:   3'- -CACCG-GCUGGCUguGGCUAGCaCGGU- -5'
10283 3' -58.9 NC_002687.1 + 312766 0.7 0.745279
Target:  5'- aUGGCCG-CCGuCGCgGAUaccUGUGCCAc -3'
miRNA:   3'- cACCGGCuGGCuGUGgCUA---GCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 28108 0.71 0.717919
Target:  5'- -cGGUCGAa-GACACgCGAUCGUGCUu -3'
miRNA:   3'- caCCGGCUggCUGUG-GCUAGCACGGu -5'
10283 3' -58.9 NC_002687.1 + 199798 0.66 0.92493
Target:  5'- gGUGGUggCGAUUGGCACCGAgCGUaauuuauuacgacgGCCAc -3'
miRNA:   3'- -CACCG--GCUGGCUGUGGCUaGCA--------------CGGU- -5'
10283 3' -58.9 NC_002687.1 + 224389 0.67 0.916092
Target:  5'- --uGCCGauGCCGAUGCCGAUgcCGaUGCCGa -3'
miRNA:   3'- cacCGGC--UGGCUGUGGCUA--GC-ACGGU- -5'
10283 3' -58.9 NC_002687.1 + 97800 0.67 0.892972
Target:  5'- cUGGCCcACCGGCACC-AUCG-GCa- -3'
miRNA:   3'- cACCGGcUGGCUGUGGcUAGCaCGgu -5'
10283 3' -58.9 NC_002687.1 + 84518 0.67 0.889227
Target:  5'- gGUGGCuucaCGcucgguacagacgucACCGGCAUCG-UCGUGCCGu -3'
miRNA:   3'- -CACCG----GC---------------UGGCUGUGGCuAGCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 238689 0.68 0.876243
Target:  5'- -gGGCC-ACCGACGCUGcgCGUgaaacucuuguggauGCCAu -3'
miRNA:   3'- caCCGGcUGGCUGUGGCuaGCA---------------CGGU- -5'
10283 3' -58.9 NC_002687.1 + 172800 0.68 0.880219
Target:  5'- --aGCacaacaGGCCGGCACCGAUUGUGaCAa -3'
miRNA:   3'- cacCGg-----CUGGCUGUGGCUAGCACgGU- -5'
10283 3' -58.9 NC_002687.1 + 209796 0.67 0.904357
Target:  5'- -gGGCCGAUCGGCGucuUUGAUCGagauuuggagagcUGCCGc -3'
miRNA:   3'- caCCGGCUGGCUGU---GGCUAGC-------------ACGGU- -5'
10283 3' -58.9 NC_002687.1 + 145747 0.68 0.873555
Target:  5'- cUGGCCG-CCGACAagaucCCGAUCaacacgGCCu -3'
miRNA:   3'- cACCGGCuGGCUGU-----GGCUAGca----CGGu -5'
10283 3' -58.9 NC_002687.1 + 2732 1.08 0.004631
Target:  5'- cGUGGCCGACCGACACCGAUCGUGCCAc -3'
miRNA:   3'- -CACCGGCUGGCUGUGGCUAGCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 316044 0.71 0.708662
Target:  5'- cUGGCgGugguGCCGAUgguGCCGAUgGUGCCGg -3'
miRNA:   3'- cACCGgC----UGGCUG---UGGCUAgCACGGU- -5'
10283 3' -58.9 NC_002687.1 + 291265 0.7 0.745279
Target:  5'- cGUGGCCGACUGcACuGCCGAagUGaGCCAg -3'
miRNA:   3'- -CACCGGCUGGC-UG-UGGCUa-GCaCGGU- -5'
10283 3' -58.9 NC_002687.1 + 299259 0.7 0.77187
Target:  5'- -cGGCCGACUGGCGCCuGAauuccUUG-GCCGc -3'
miRNA:   3'- caCCGGCUGGCUGUGG-CU-----AGCaCGGU- -5'
10283 3' -58.9 NC_002687.1 + 29929 0.67 0.910616
Target:  5'- -aGGCaGGCauCGGCuuuCCGAUCGUGCUg -3'
miRNA:   3'- caCCGgCUG--GCUGu--GGCUAGCACGGu -5'
10283 3' -58.9 NC_002687.1 + 215666 0.68 0.880219
Target:  5'- cGUGGCCGucacugucGCCGuCGCCGAgccuaucgcCGUcGCCGa -3'
miRNA:   3'- -CACCGGC--------UGGCuGUGGCUa--------GCA-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.