Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10283 | 3' | -58.9 | NC_002687.1 | + | 151560 | 0.67 | 0.899054 |
Target: 5'- -aGGCUGcuucucuauUCGACACUcGUCGUGCCGa -3' miRNA: 3'- caCCGGCu--------GGCUGUGGcUAGCACGGU- -5' |
|||||||
10283 | 3' | -58.9 | NC_002687.1 | + | 215666 | 0.68 | 0.880219 |
Target: 5'- cGUGGCCGucacugucGCCGuCGCCGAgccuaucgcCGUcGCCGa -3' miRNA: 3'- -CACCGGC--------UGGCuGUGGCUa--------GCA-CGGU- -5' |
|||||||
10283 | 3' | -58.9 | NC_002687.1 | + | 269893 | 0.68 | 0.866705 |
Target: 5'- -gGGUCGAacagccacgccUUGGCACUGGUgGUGCCAa -3' miRNA: 3'- caCCGGCU-----------GGCUGUGGCUAgCACGGU- -5' |
|||||||
10283 | 3' | -58.9 | NC_002687.1 | + | 328257 | 0.69 | 0.829821 |
Target: 5'- uUGGUgGACaaCGuCGgCGAUCGUGCCAc -3' miRNA: 3'- cACCGgCUG--GCuGUgGCUAGCACGGU- -5' |
|||||||
10283 | 3' | -58.9 | NC_002687.1 | + | 154276 | 0.69 | 0.829821 |
Target: 5'- cGUGGCCGACacgcggugUGACAUUGAUgGUGUgGa -3' miRNA: 3'- -CACCGGCUG--------GCUGUGGCUAgCACGgU- -5' |
|||||||
10283 | 3' | -58.9 | NC_002687.1 | + | 72924 | 0.69 | 0.821956 |
Target: 5'- cGUGuGCCGacgccgccgccGCCGACacaccGCCGAgcaGUGCCAg -3' miRNA: 3'- -CAC-CGGC-----------UGGCUG-----UGGCUag-CACGGU- -5' |
|||||||
10283 | 3' | -58.9 | NC_002687.1 | + | 299259 | 0.7 | 0.77187 |
Target: 5'- -cGGCCGACUGGCGCCuGAauuccUUG-GCCGc -3' miRNA: 3'- caCCGGCUGGCUGUGG-CU-----AGCaCGGU- -5' |
|||||||
10283 | 3' | -58.9 | NC_002687.1 | + | 291265 | 0.7 | 0.745279 |
Target: 5'- cGUGGCCGACUGcACuGCCGAagUGaGCCAg -3' miRNA: 3'- -CACCGGCUGGC-UG-UGGCUa-GCaCGGU- -5' |
|||||||
10283 | 3' | -58.9 | NC_002687.1 | + | 101159 | 0.66 | 0.935939 |
Target: 5'- aGUGGUgUGACCGAaauguCGCCGAU--UGCCAg -3' miRNA: 3'- -CACCG-GCUGGCU-----GUGGCUAgcACGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home