Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10283 | 3' | -58.9 | NC_002687.1 | + | 151560 | 0.67 | 0.899054 |
Target: 5'- -aGGCUGcuucucuauUCGACACUcGUCGUGCCGa -3' miRNA: 3'- caCCGGCu--------GGCUGUGGcUAGCACGGU- -5' |
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10283 | 3' | -58.9 | NC_002687.1 | + | 98160 | 0.67 | 0.899054 |
Target: 5'- -cGGU--GCCGAUgguGCCGGUgGUGCCAg -3' miRNA: 3'- caCCGgcUGGCUG---UGGCUAgCACGGU- -5' |
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10283 | 3' | -58.9 | NC_002687.1 | + | 209796 | 0.67 | 0.904357 |
Target: 5'- -gGGCCGAUCGGCGucuUUGAUCGagauuuggagagcUGCCGc -3' miRNA: 3'- caCCGGCUGGCUGU---GGCUAGC-------------ACGGU- -5' |
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10283 | 3' | -58.9 | NC_002687.1 | + | 211025 | 0.67 | 0.904936 |
Target: 5'- cGUGGCCGGCCu-CugCGAccaGUGCa- -3' miRNA: 3'- -CACCGGCUGGcuGugGCUag-CACGgu -5' |
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10283 | 3' | -58.9 | NC_002687.1 | + | 29929 | 0.67 | 0.910616 |
Target: 5'- -aGGCaGGCauCGGCuuuCCGAUCGUGCUg -3' miRNA: 3'- caCCGgCUG--GCUGu--GGCUAGCACGGu -5' |
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10283 | 3' | -58.9 | NC_002687.1 | + | 224389 | 0.67 | 0.916092 |
Target: 5'- --uGCCGauGCCGAUGCCGAUgcCGaUGCCGa -3' miRNA: 3'- cacCGGC--UGGCUGUGGCUA--GC-ACGGU- -5' |
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10283 | 3' | -58.9 | NC_002687.1 | + | 268315 | 0.66 | 0.919803 |
Target: 5'- -cGGCCGACCucaaaggcaaccugGAUACCGA--GUGCUu -3' miRNA: 3'- caCCGGCUGG--------------CUGUGGCUagCACGGu -5' |
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10283 | 3' | -58.9 | NC_002687.1 | + | 199798 | 0.66 | 0.92493 |
Target: 5'- gGUGGUggCGAUUGGCACCGAgCGUaauuuauuacgacgGCCAc -3' miRNA: 3'- -CACCG--GCUGGCUGUGGCUaGCA--------------CGGU- -5' |
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10283 | 3' | -58.9 | NC_002687.1 | + | 101159 | 0.66 | 0.935939 |
Target: 5'- aGUGGUgUGACCGAaauguCGCCGAU--UGCCAg -3' miRNA: 3'- -CACCG-GCUGGCU-----GUGGCUAgcACGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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