miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10284 3' -52.3 NC_002687.1 + 266410 0.69 0.988821
Target:  5'- aGAGGCCGggGCAucacccaggUACGAGAcaucaaucgagucAUCACCg -3'
miRNA:   3'- gCUCUGGCggCGU---------AUGCUCU-------------UAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 262829 0.69 0.992422
Target:  5'- ---uGCCGCCGCA-ACGAGAccaucuacuucaAUCACg -3'
miRNA:   3'- gcucUGGCGGCGUaUGCUCU------------UAGUGg -5'
10284 3' -52.3 NC_002687.1 + 260904 0.66 0.998808
Target:  5'- uGAGccgcuGCCGCCGUcaa-GAGggUCcCCa -3'
miRNA:   3'- gCUC-----UGGCGGCGuaugCUCuuAGuGG- -5'
10284 3' -52.3 NC_002687.1 + 260044 0.67 0.998307
Target:  5'- -uGGGCCGCgGUuUACGAGcacagGAUCugCg -3'
miRNA:   3'- gcUCUGGCGgCGuAUGCUC-----UUAGugG- -5'
10284 3' -52.3 NC_002687.1 + 258059 0.68 0.994745
Target:  5'- aCGGGAUUGCUGCuGUugGAGGAaaaggacaaagacaUCACa -3'
miRNA:   3'- -GCUCUGGCGGCG-UAugCUCUU--------------AGUGg -5'
10284 3' -52.3 NC_002687.1 + 255163 0.77 0.768609
Target:  5'- gGGGGCCGCCGCGUugauccugcgaGCGAGGcgaaACCa -3'
miRNA:   3'- gCUCUGGCGGCGUA-----------UGCUCUuag-UGG- -5'
10284 3' -52.3 NC_002687.1 + 254787 0.66 0.998576
Target:  5'- cCGGGcCUGUgGCGU-CGGGuAUCACCc -3'
miRNA:   3'- -GCUCuGGCGgCGUAuGCUCuUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 254727 0.7 0.982546
Target:  5'- -cAGGuuGCCGUGgcUGCGAG-GUCACCg -3'
miRNA:   3'- gcUCUggCGGCGU--AUGCUCuUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 249228 0.67 0.997639
Target:  5'- aGAGACCGauuCCGCccGCGAauuuaGAAaucuUCGCCg -3'
miRNA:   3'- gCUCUGGC---GGCGuaUGCU-----CUU----AGUGG- -5'
10284 3' -52.3 NC_002687.1 + 245113 0.72 0.958472
Target:  5'- uCGAGACCGCCuCGa--GAGAAUguCCa -3'
miRNA:   3'- -GCUCUGGCGGcGUaugCUCUUAguGG- -5'
10284 3' -52.3 NC_002687.1 + 244821 0.74 0.881066
Target:  5'- --uGACUGCCGCA-ACGGGGG-CACCg -3'
miRNA:   3'- gcuCUGGCGGCGUaUGCUCUUaGUGG- -5'
10284 3' -52.3 NC_002687.1 + 243568 0.66 0.999177
Target:  5'- uGAGGCCGCCuuCAuuUACGAcaccGAUCACa -3'
miRNA:   3'- gCUCUGGCGGc-GU--AUGCUc---UUAGUGg -5'
10284 3' -52.3 NC_002687.1 + 240410 0.71 0.967879
Target:  5'- uCGAGcugcggaACaCGCUGcCAUGCGAG-GUCACCg -3'
miRNA:   3'- -GCUC-------UG-GCGGC-GUAUGCUCuUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 239068 0.68 0.993363
Target:  5'- aGAGugCGUCGCGUugauugagggaaACGGGAAggAUCa -3'
miRNA:   3'- gCUCugGCGGCGUA------------UGCUCUUagUGG- -5'
10284 3' -52.3 NC_002687.1 + 238322 0.7 0.980576
Target:  5'- aGuGAUCGUCGUggACGAGu-UCACCa -3'
miRNA:   3'- gCuCUGGCGGCGuaUGCUCuuAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 234309 0.66 0.999007
Target:  5'- uCGAGGCUGCCGCcgcccuUGAGAAg-GCg -3'
miRNA:   3'- -GCUCUGGCGGCGuau---GCUCUUagUGg -5'
10284 3' -52.3 NC_002687.1 + 217950 0.67 0.996663
Target:  5'- aCGAGcaAUCGCCGCccgccaccccguUGCGGuacGGAUCACCc -3'
miRNA:   3'- -GCUC--UGGCGGCGu-----------AUGCU---CUUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 215643 0.67 0.997996
Target:  5'- cCGAGccuAUCGCCGUcgcCGAGccuAUCGCCg -3'
miRNA:   3'- -GCUC---UGGCGGCGuauGCUCu--UAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 210677 0.66 0.999177
Target:  5'- aGAGGCCgGCCaCGUACGuuccacAGUCACUc -3'
miRNA:   3'- gCUCUGG-CGGcGUAUGCuc----UUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 205431 0.67 0.996764
Target:  5'- uGGGACaCGCUGUGggcACGGacGUCACCa -3'
miRNA:   3'- gCUCUG-GCGGCGUa--UGCUcuUAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.