miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10284 3' -52.3 NC_002687.1 + 332878 0.69 0.987559
Target:  5'- aGGGugUGCUGCAgcCGcaaaggguGGAUCACCg -3'
miRNA:   3'- gCUCugGCGGCGUauGCu-------CUUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 330959 0.67 0.996764
Target:  5'- uGuuGCaUGCCaCGUACGuGAAUCGCCa -3'
miRNA:   3'- gCucUG-GCGGcGUAUGCuCUUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 329740 0.73 0.938135
Target:  5'- cCGcuGCCGUCGUAUACGAGugcgaacacGAUCGCUg -3'
miRNA:   3'- -GCucUGGCGGCGUAUGCUC---------UUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 320802 0.72 0.958472
Target:  5'- uCGAGACCGCCuCGa--GAGAAUguCCa -3'
miRNA:   3'- -GCUCUGGCGGcGUaugCUCUUAguGG- -5'
10284 3' -52.3 NC_002687.1 + 317186 0.66 0.998576
Target:  5'- uCGAGGCgguuguCGCCGUGUACGucucguGuAGUCAUCa -3'
miRNA:   3'- -GCUCUG------GCGGCGUAUGCu-----C-UUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 315826 0.68 0.993363
Target:  5'- cCGGGugccGCCGCCGCAccCGAaGAUCccGCCg -3'
miRNA:   3'- -GCUC----UGGCGGCGUauGCUcUUAG--UGG- -5'
10284 3' -52.3 NC_002687.1 + 313333 0.67 0.99723
Target:  5'- -aAGGCCGgUGCGgaagaguCGAGGAUCGCg -3'
miRNA:   3'- gcUCUGGCgGCGUau-----GCUCUUAGUGg -5'
10284 3' -52.3 NC_002687.1 + 308788 0.67 0.99723
Target:  5'- gGGGGCgCGcCCGCcccGCcGGggUCGCCg -3'
miRNA:   3'- gCUCUG-GC-GGCGua-UGcUCuuAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 307741 0.66 0.998576
Target:  5'- gGAGGCCaugGCCaUcgGCGAGGG-CGCCg -3'
miRNA:   3'- gCUCUGG---CGGcGuaUGCUCUUaGUGG- -5'
10284 3' -52.3 NC_002687.1 + 305123 0.66 0.999177
Target:  5'- gGAGAgCCGCCGCGUugaacAUGAG----GCCu -3'
miRNA:   3'- gCUCU-GGCGGCGUA-----UGCUCuuagUGG- -5'
10284 3' -52.3 NC_002687.1 + 298089 0.66 0.999129
Target:  5'- cCGGGGuguUCGCCGUGUugGGGGAaacacagucuucguUUGCCg -3'
miRNA:   3'- -GCUCU---GGCGGCGUAugCUCUU--------------AGUGG- -5'
10284 3' -52.3 NC_002687.1 + 298012 0.66 0.999177
Target:  5'- gCGAGGCgGCCGCuuucGUGCcaaAGAAcaagCGCCc -3'
miRNA:   3'- -GCUCUGgCGGCG----UAUGc--UCUUa---GUGG- -5'
10284 3' -52.3 NC_002687.1 + 296332 0.7 0.978444
Target:  5'- gCGucaACCGCaCGCAgugACGAGggUgACCc -3'
miRNA:   3'- -GCuc-UGGCG-GCGUa--UGCUCuuAgUGG- -5'
10284 3' -52.3 NC_002687.1 + 295362 0.66 0.998989
Target:  5'- uGAuACCGguggcCCGCGUuucuggaGCGAGuAUCACCa -3'
miRNA:   3'- gCUcUGGC-----GGCGUA-------UGCUCuUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 294884 0.67 0.99723
Target:  5'- ---cACCGCCuGCGccGCGAGGcgCACCc -3'
miRNA:   3'- gcucUGGCGG-CGUa-UGCUCUuaGUGG- -5'
10284 3' -52.3 NC_002687.1 + 292729 0.66 0.999007
Target:  5'- uGAcGGCUGuuGCGUGCGAuAcgCAUCg -3'
miRNA:   3'- gCU-CUGGCggCGUAUGCUcUuaGUGG- -5'
10284 3' -52.3 NC_002687.1 + 290278 0.66 0.999007
Target:  5'- --cGACCGCCaagaGCAUGCcuGAGGAgacgacggucacUCGCCc -3'
miRNA:   3'- gcuCUGGCGG----CGUAUG--CUCUU------------AGUGG- -5'
10284 3' -52.3 NC_002687.1 + 283064 0.7 0.982546
Target:  5'- gGAGACUGCCGCuauccuccGCGAGAAgaugaACg -3'
miRNA:   3'- gCUCUGGCGGCGua------UGCUCUUag---UGg -5'
10284 3' -52.3 NC_002687.1 + 281797 0.67 0.99723
Target:  5'- aGAGAUCGaCGaacuUGCGAauaGGAUCGCCg -3'
miRNA:   3'- gCUCUGGCgGCgu--AUGCU---CUUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 281454 0.67 0.998307
Target:  5'- uCGAucucuuCCGCCGCAgcgGCGAaaguggaaGGAUCACa -3'
miRNA:   3'- -GCUcu----GGCGGCGUa--UGCU--------CUUAGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.