Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10284 | 3' | -52.3 | NC_002687.1 | + | 30240 | 0.66 | 0.999321 |
Target: 5'- uCGAGGCCGUCGUuguugGCGuG-GUCAUg -3' miRNA: 3'- -GCUCUGGCGGCGua---UGCuCuUAGUGg -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 11086 | 0.66 | 0.998576 |
Target: 5'- uGAGAgCGuCCGCuuccgacgccccGUACGGGAuguUCACg -3' miRNA: 3'- gCUCUgGC-GGCG------------UAUGCUCUu--AGUGg -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 88194 | 0.66 | 0.999007 |
Target: 5'- uCGGGGCUGCCGCA-AUGG---UCACa -3' miRNA: 3'- -GCUCUGGCGGCGUaUGCUcuuAGUGg -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 305123 | 0.66 | 0.999177 |
Target: 5'- gGAGAgCCGCCGCGUugaacAUGAG----GCCu -3' miRNA: 3'- gCUCU-GGCGGCGUA-----UGCUCuuagUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 254787 | 0.66 | 0.998576 |
Target: 5'- cCGGGcCUGUgGCGU-CGGGuAUCACCc -3' miRNA: 3'- -GCUCuGGCGgCGUAuGCUCuUAGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 159626 | 0.66 | 0.998808 |
Target: 5'- aGGGACuCGCCccGCGcuugucACG-GGAUCGCCa -3' miRNA: 3'- gCUCUG-GCGG--CGUa-----UGCuCUUAGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 66617 | 0.66 | 0.998808 |
Target: 5'- uGAGACCGCCaugGCcccccuGUACGAcGGUUugGCCa -3' miRNA: 3'- gCUCUGGCGG---CG------UAUGCUcUUAG--UGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 97118 | 0.66 | 0.999007 |
Target: 5'- aGaAGACCGCUGUGUcACGGuccuGuAGUCACCc -3' miRNA: 3'- gC-UCUGGCGGCGUA-UGCU----C-UUAGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 234309 | 0.66 | 0.999007 |
Target: 5'- uCGAGGCUGCCGCcgcccuUGAGAAg-GCg -3' miRNA: 3'- -GCUCUGGCGGCGuau---GCUCUUagUGg -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 307741 | 0.66 | 0.998576 |
Target: 5'- gGAGGCCaugGCCaUcgGCGAGGG-CGCCg -3' miRNA: 3'- gCUCUGG---CGGcGuaUGCUCUUaGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 317186 | 0.66 | 0.998576 |
Target: 5'- uCGAGGCgguuguCGCCGUGUACGucucguGuAGUCAUCa -3' miRNA: 3'- -GCUCUG------GCGGCGUAUGCu-----C-UUAGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 112728 | 0.66 | 0.998787 |
Target: 5'- aGAGA-CGCCGUcgaggucuggaucAUccACGAGAGacuUCACCa -3' miRNA: 3'- gCUCUgGCGGCG-------------UA--UGCUCUU---AGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 201272 | 0.66 | 0.999321 |
Target: 5'- aGAGuCCGCgccCGCAuUGCGAGAcaCACa -3' miRNA: 3'- gCUCuGGCG---GCGU-AUGCUCUuaGUGg -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 144266 | 0.66 | 0.999177 |
Target: 5'- -aAGAUUGCCGUGUuucGCGGGggUacuUACCg -3' miRNA: 3'- gcUCUGGCGGCGUA---UGCUCuuA---GUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 87546 | 0.66 | 0.999007 |
Target: 5'- -uGGugCGcCCGaCGUugugGCGGGggUUACCg -3' miRNA: 3'- gcUCugGC-GGC-GUA----UGCUCuuAGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 71765 | 0.66 | 0.999007 |
Target: 5'- gGAGuacuugaCGCCGUAUGCGGugg-CACCg -3' miRNA: 3'- gCUCug-----GCGGCGUAUGCUcuuaGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 292729 | 0.66 | 0.999007 |
Target: 5'- uGAcGGCUGuuGCGUGCGAuAcgCAUCg -3' miRNA: 3'- gCU-CUGGCggCGUAUGCUcUuaGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 295362 | 0.66 | 0.998989 |
Target: 5'- uGAuACCGguggcCCGCGUuucuggaGCGAGuAUCACCa -3' miRNA: 3'- gCUcUGGC-----GGCGUA-------UGCUCuUAGUGG- -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 138722 | 0.66 | 0.998808 |
Target: 5'- aCGAGcCCGCUGU--GCGAGAAUgGg- -3' miRNA: 3'- -GCUCuGGCGGCGuaUGCUCUUAgUgg -5' |
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10284 | 3' | -52.3 | NC_002687.1 | + | 260904 | 0.66 | 0.998808 |
Target: 5'- uGAGccgcuGCCGCCGUcaa-GAGggUCcCCa -3' miRNA: 3'- gCUC-----UGGCGGCGuaugCUCuuAGuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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