miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10284 3' -52.3 NC_002687.1 + 3203 1.13 0.009246
Target:  5'- uCGAGACCGCCGCAUACGAGAAUCACCa -3'
miRNA:   3'- -GCUCUGGCGGCGUAUGCUCUUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 10849 0.67 0.99723
Target:  5'- gCGuuGGCCaguGCCGCGUGCuuguGggUUACCa -3'
miRNA:   3'- -GCu-CUGG---CGGCGUAUGcu--CuuAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 11086 0.66 0.998576
Target:  5'- uGAGAgCGuCCGCuuccgacgccccGUACGGGAuguUCACg -3'
miRNA:   3'- gCUCUgGC-GGCG------------UAUGCUCUu--AGUGg -5'
10284 3' -52.3 NC_002687.1 + 11300 0.71 0.971015
Target:  5'- gCGGGACaguuGCCGCGUucaAgGAGA-UCGCCu -3'
miRNA:   3'- -GCUCUGg---CGGCGUA---UgCUCUuAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 18612 0.7 0.975905
Target:  5'- uGGGACCagaagcuGCCGCc-ACGGGGuUCGCCg -3'
miRNA:   3'- gCUCUGG-------CGGCGuaUGCUCUuAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 30240 0.66 0.999321
Target:  5'- uCGAGGCCGUCGUuguugGCGuG-GUCAUg -3'
miRNA:   3'- -GCUCUGGCGGCGua---UGCuCuUAGUGg -5'
10284 3' -52.3 NC_002687.1 + 32968 0.68 0.996454
Target:  5'- gCGAGACgGCgGCugaaaacaacuagauAUGCGAGAuaCACUg -3'
miRNA:   3'- -GCUCUGgCGgCG---------------UAUGCUCUuaGUGG- -5'
10284 3' -52.3 NC_002687.1 + 66617 0.66 0.998808
Target:  5'- uGAGACCGCCaugGCcccccuGUACGAcGGUUugGCCa -3'
miRNA:   3'- gCUCUGGCGG---CG------UAUGCUcUUAG--UGG- -5'
10284 3' -52.3 NC_002687.1 + 70107 0.67 0.998307
Target:  5'- aGAGGCCacagagGCUGCAUcucuuuuuGCGgAGGucGUCGCCg -3'
miRNA:   3'- gCUCUGG------CGGCGUA--------UGC-UCU--UAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 71765 0.66 0.999007
Target:  5'- gGAGuacuugaCGCCGUAUGCGGugg-CACCg -3'
miRNA:   3'- gCUCug-----GCGGCGUAUGCUcuuaGUGG- -5'
10284 3' -52.3 NC_002687.1 + 71893 0.72 0.946915
Target:  5'- cCGuGGCCGUCGCcUACGAcGAuacCACCg -3'
miRNA:   3'- -GCuCUGGCGGCGuAUGCU-CUua-GUGG- -5'
10284 3' -52.3 NC_002687.1 + 72842 0.66 0.999007
Target:  5'- uGAGAUCGUcccugCGCAUaucuGCGAGAcUC-CCg -3'
miRNA:   3'- gCUCUGGCG-----GCGUA----UGCUCUuAGuGG- -5'
10284 3' -52.3 NC_002687.1 + 78051 0.68 0.994207
Target:  5'- gCGGcGGCCGCaguucuCGCGUGCucGAGAA-CACCa -3'
miRNA:   3'- -GCU-CUGGCG------GCGUAUG--CUCUUaGUGG- -5'
10284 3' -52.3 NC_002687.1 + 87546 0.66 0.999007
Target:  5'- -uGGugCGcCCGaCGUugugGCGGGggUUACCg -3'
miRNA:   3'- gcUCugGC-GGC-GUA----UGCUCuuAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 88194 0.66 0.999007
Target:  5'- uCGGGGCUGCCGCA-AUGG---UCACa -3'
miRNA:   3'- -GCUCUGGCGGCGUaUGCUcuuAGUGg -5'
10284 3' -52.3 NC_002687.1 + 97118 0.66 0.999007
Target:  5'- aGaAGACCGCUGUGUcACGGuccuGuAGUCACCc -3'
miRNA:   3'- gC-UCUGGCGGCGUA-UGCU----C-UUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 97904 0.7 0.978444
Target:  5'- aCGAGGCCacauGCCGaCAacACGAGAAUUuCCa -3'
miRNA:   3'- -GCUCUGG----CGGC-GUa-UGCUCUUAGuGG- -5'
10284 3' -52.3 NC_002687.1 + 98839 0.71 0.967879
Target:  5'- uGGGAuacucacCCGCCGCGUGgGAGccaaCACCa -3'
miRNA:   3'- gCUCU-------GGCGGCGUAUgCUCuua-GUGG- -5'
10284 3' -52.3 NC_002687.1 + 104712 0.7 0.984361
Target:  5'- aGGGACCaGCCGaagacgacgaGUACGuGggUgGCCa -3'
miRNA:   3'- gCUCUGG-CGGCg---------UAUGCuCuuAgUGG- -5'
10284 3' -52.3 NC_002687.1 + 104834 0.67 0.996764
Target:  5'- gGAGugCGUCGUGgcCGAuaaAAUCACCg -3'
miRNA:   3'- gCUCugGCGGCGUauGCUc--UUAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.