miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10284 3' -52.3 NC_002687.1 + 255163 0.77 0.768609
Target:  5'- gGGGGCCGCCGCGUugauccugcgaGCGAGGcgaaACCa -3'
miRNA:   3'- gCUCUGGCGGCGUA-----------UGCUCUuag-UGG- -5'
10284 3' -52.3 NC_002687.1 + 154072 0.67 0.99723
Target:  5'- gGuuGCUGCCgGCGUGCGuc-GUCGCCu -3'
miRNA:   3'- gCucUGGCGG-CGUAUGCucuUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 294884 0.67 0.99723
Target:  5'- ---cACCGCCuGCGccGCGAGGcgCACCc -3'
miRNA:   3'- gcucUGGCGG-CGUa-UGCUCUuaGUGG- -5'
10284 3' -52.3 NC_002687.1 + 305123 0.66 0.999177
Target:  5'- gGAGAgCCGCCGCGUugaacAUGAG----GCCu -3'
miRNA:   3'- gCUCU-GGCGGCGUA-----UGCUCuuagUGG- -5'
10284 3' -52.3 NC_002687.1 + 245113 0.72 0.958472
Target:  5'- uCGAGACCGCCuCGa--GAGAAUguCCa -3'
miRNA:   3'- -GCUCUGGCGGcGUaugCUCUUAguGG- -5'
10284 3' -52.3 NC_002687.1 + 98839 0.71 0.967879
Target:  5'- uGGGAuacucacCCGCCGCGUGgGAGccaaCACCa -3'
miRNA:   3'- gCUCU-------GGCGGCGUAUgCUCuua-GUGG- -5'
10284 3' -52.3 NC_002687.1 + 97904 0.7 0.978444
Target:  5'- aCGAGGCCacauGCCGaCAacACGAGAAUUuCCa -3'
miRNA:   3'- -GCUCUGG----CGGC-GUa-UGCUCUUAGuGG- -5'
10284 3' -52.3 NC_002687.1 + 104712 0.7 0.984361
Target:  5'- aGGGACCaGCCGaagacgacgaGUACGuGggUgGCCa -3'
miRNA:   3'- gCUCUGG-CGGCg---------UAUGCuCuuAgUGG- -5'
10284 3' -52.3 NC_002687.1 + 239068 0.68 0.993363
Target:  5'- aGAGugCGUCGCGUugauugagggaaACGGGAAggAUCa -3'
miRNA:   3'- gCUCugGCGGCGUA------------UGCUCUUagUGG- -5'
10284 3' -52.3 NC_002687.1 + 10849 0.67 0.99723
Target:  5'- gCGuuGGCCaguGCCGCGUGCuuguGggUUACCa -3'
miRNA:   3'- -GCu-CUGG---CGGCGUAUGcu--CuuAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 258059 0.68 0.994745
Target:  5'- aCGGGAUUGCUGCuGUugGAGGAaaaggacaaagacaUCACa -3'
miRNA:   3'- -GCUCUGGCGGCG-UAugCUCUU--------------AGUGg -5'
10284 3' -52.3 NC_002687.1 + 262829 0.69 0.992422
Target:  5'- ---uGCCGCCGCA-ACGAGAccaucuacuucaAUCACg -3'
miRNA:   3'- gcucUGGCGGCGUaUGCUCU------------UAGUGg -5'
10284 3' -52.3 NC_002687.1 + 329740 0.73 0.938135
Target:  5'- cCGcuGCCGUCGUAUACGAGugcgaacacGAUCGCUg -3'
miRNA:   3'- -GCucUGGCGGCGUAUGCUC---------UUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 158749 0.68 0.995376
Target:  5'- -cAGGCCgcugaaaGCCGCGgGCGAGGccggugcaacacuaGUCGCCg -3'
miRNA:   3'- gcUCUGG-------CGGCGUaUGCUCU--------------UAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 71893 0.72 0.946915
Target:  5'- cCGuGGCCGUCGCcUACGAcGAuacCACCg -3'
miRNA:   3'- -GCuCUGGCGGCGuAUGCU-CUua-GUGG- -5'
10284 3' -52.3 NC_002687.1 + 266410 0.69 0.988821
Target:  5'- aGAGGCCGggGCAucacccaggUACGAGAcaucaaucgagucAUCACCg -3'
miRNA:   3'- gCUCUGGCggCGU---------AUGCUCU-------------UAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 104834 0.67 0.996764
Target:  5'- gGAGugCGUCGUGgcCGAuaaAAUCACCg -3'
miRNA:   3'- gCUCugGCGGCGUauGCUc--UUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 201066 0.67 0.99723
Target:  5'- gGGGAUCGCCGaggucgGAGAGggCACCu -3'
miRNA:   3'- gCUCUGGCGGCguaug-CUCUUa-GUGG- -5'
10284 3' -52.3 NC_002687.1 + 203175 0.72 0.95098
Target:  5'- uGGGGCCGCCgguGCAUACGAccuGAG-CACg -3'
miRNA:   3'- gCUCUGGCGG---CGUAUGCU---CUUaGUGg -5'
10284 3' -52.3 NC_002687.1 + 118457 0.71 0.968173
Target:  5'- -aAGAaCGCCGCA-GCGAagcaGAGUCACCg -3'
miRNA:   3'- gcUCUgGCGGCGUaUGCU----CUUAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.