miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10284 3' -52.3 NC_002687.1 + 205431 0.67 0.996764
Target:  5'- uGGGACaCGCUGUGggcACGGacGUCACCa -3'
miRNA:   3'- gCUCUG-GCGGCGUa--UGCUcuUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 115246 0.67 0.998307
Target:  5'- cCGAGaAUCGCaGCGUAuCGAG-AUUGCCa -3'
miRNA:   3'- -GCUC-UGGCGgCGUAU-GCUCuUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 215643 0.67 0.997996
Target:  5'- cCGAGccuAUCGCCGUcgcCGAGccuAUCGCCg -3'
miRNA:   3'- -GCUC---UGGCGGCGuauGCUCu--UAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 159203 0.67 0.997996
Target:  5'- uCGAcGGCCGCCGCcucCGGGcuuUCgACCg -3'
miRNA:   3'- -GCU-CUGGCGGCGuauGCUCuu-AG-UGG- -5'
10284 3' -52.3 NC_002687.1 + 249228 0.67 0.997639
Target:  5'- aGAGACCGauuCCGCccGCGAauuuaGAAaucuUCGCCg -3'
miRNA:   3'- gCUCUGGC---GGCGuaUGCU-----CUU----AGUGG- -5'
10284 3' -52.3 NC_002687.1 + 313333 0.67 0.99723
Target:  5'- -aAGGCCGgUGCGgaagaguCGAGGAUCGCg -3'
miRNA:   3'- gcUCUGGCgGCGUau-----GCUCUUAGUGg -5'
10284 3' -52.3 NC_002687.1 + 308788 0.67 0.99723
Target:  5'- gGGGGCgCGcCCGCcccGCcGGggUCGCCg -3'
miRNA:   3'- gCUCUG-GC-GGCGua-UGcUCuuAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 157697 0.67 0.99723
Target:  5'- -uAGGCUGCCGCGggaGAGAGuUCAUg -3'
miRNA:   3'- gcUCUGGCGGCGUaugCUCUU-AGUGg -5'
10284 3' -52.3 NC_002687.1 + 281797 0.67 0.99723
Target:  5'- aGAGAUCGaCGaacuUGCGAauaGGAUCGCCg -3'
miRNA:   3'- gCUCUGGCgGCgu--AUGCU---CUUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 307741 0.66 0.998576
Target:  5'- gGAGGCCaugGCCaUcgGCGAGGG-CGCCg -3'
miRNA:   3'- gCUCUGG---CGGcGuaUGCUCUUaGUGG- -5'
10284 3' -52.3 NC_002687.1 + 317186 0.66 0.998576
Target:  5'- uCGAGGCgguuguCGCCGUGUACGucucguGuAGUCAUCa -3'
miRNA:   3'- -GCUCUG------GCGGCGUAUGCu-----C-UUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 112728 0.66 0.998787
Target:  5'- aGAGA-CGCCGUcgaggucuggaucAUccACGAGAGacuUCACCa -3'
miRNA:   3'- gCUCUgGCGGCG-------------UA--UGCUCUU---AGUGG- -5'
10284 3' -52.3 NC_002687.1 + 201272 0.66 0.999321
Target:  5'- aGAGuCCGCgccCGCAuUGCGAGAcaCACa -3'
miRNA:   3'- gCUCuGGCG---GCGU-AUGCUCUuaGUGg -5'
10284 3' -52.3 NC_002687.1 + 144266 0.66 0.999177
Target:  5'- -aAGAUUGCCGUGUuucGCGGGggUacuUACCg -3'
miRNA:   3'- gcUCUGGCGGCGUA---UGCUCuuA---GUGG- -5'
10284 3' -52.3 NC_002687.1 + 87546 0.66 0.999007
Target:  5'- -uGGugCGcCCGaCGUugugGCGGGggUUACCg -3'
miRNA:   3'- gcUCugGC-GGC-GUA----UGCUCuuAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 71765 0.66 0.999007
Target:  5'- gGAGuacuugaCGCCGUAUGCGGugg-CACCg -3'
miRNA:   3'- gCUCug-----GCGGCGUAUGCUcuuaGUGG- -5'
10284 3' -52.3 NC_002687.1 + 292729 0.66 0.999007
Target:  5'- uGAcGGCUGuuGCGUGCGAuAcgCAUCg -3'
miRNA:   3'- gCU-CUGGCggCGUAUGCUcUuaGUGG- -5'
10284 3' -52.3 NC_002687.1 + 295362 0.66 0.998989
Target:  5'- uGAuACCGguggcCCGCGUuucuggaGCGAGuAUCACCa -3'
miRNA:   3'- gCUcUGGC-----GGCGUA-------UGCUCuUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 138722 0.66 0.998808
Target:  5'- aCGAGcCCGCUGU--GCGAGAAUgGg- -3'
miRNA:   3'- -GCUCuGGCGGCGuaUGCUCUUAgUgg -5'
10284 3' -52.3 NC_002687.1 + 260904 0.66 0.998808
Target:  5'- uGAGccgcuGCCGCCGUcaa-GAGggUCcCCa -3'
miRNA:   3'- gCUC-----UGGCGGCGuaugCUCuuAGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.