miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10284 3' -52.3 NC_002687.1 + 3203 1.13 0.009246
Target:  5'- uCGAGACCGCCGCAUACGAGAAUCACCa -3'
miRNA:   3'- -GCUCUGGCGGCGUAUGCUCUUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 255163 0.77 0.768609
Target:  5'- gGGGGCCGCCGCGUugauccugcgaGCGAGGcgaaACCa -3'
miRNA:   3'- gCUCUGGCGGCGUA-----------UGCUCUuag-UGG- -5'
10284 3' -52.3 NC_002687.1 + 145592 0.76 0.812371
Target:  5'- aCGAGGUCGCCGUA-GCGAGAcacguUCGCCg -3'
miRNA:   3'- -GCUCUGGCGGCGUaUGCUCUu----AGUGG- -5'
10284 3' -52.3 NC_002687.1 + 244821 0.74 0.881066
Target:  5'- --uGACUGCCGCA-ACGGGGG-CACCg -3'
miRNA:   3'- gcuCUGGCGGCGUaUGCUCUUaGUGG- -5'
10284 3' -52.3 NC_002687.1 + 329740 0.73 0.938135
Target:  5'- cCGcuGCCGUCGUAUACGAGugcgaacacGAUCGCUg -3'
miRNA:   3'- -GCucUGGCGGCGUAUGCUC---------UUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 71893 0.72 0.946915
Target:  5'- cCGuGGCCGUCGCcUACGAcGAuacCACCg -3'
miRNA:   3'- -GCuCUGGCGGCGuAUGCU-CUua-GUGG- -5'
10284 3' -52.3 NC_002687.1 + 203175 0.72 0.95098
Target:  5'- uGGGGCCGCCgguGCAUACGAccuGAG-CACg -3'
miRNA:   3'- gCUCUGGCGG---CGUAUGCU---CUUaGUGg -5'
10284 3' -52.3 NC_002687.1 + 320802 0.72 0.958472
Target:  5'- uCGAGACCGCCuCGa--GAGAAUguCCa -3'
miRNA:   3'- -GCUCUGGCGGcGUaugCUCUUAguGG- -5'
10284 3' -52.3 NC_002687.1 + 245113 0.72 0.958472
Target:  5'- uCGAGACCGCCuCGa--GAGAAUguCCa -3'
miRNA:   3'- -GCUCUGGCGGcGUaugCUCUUAguGG- -5'
10284 3' -52.3 NC_002687.1 + 179010 0.71 0.961907
Target:  5'- aGuuACCGUCGCGUACGAuaGAAUgCACUu -3'
miRNA:   3'- gCucUGGCGGCGUAUGCU--CUUA-GUGG- -5'
10284 3' -52.3 NC_002687.1 + 98839 0.71 0.967879
Target:  5'- uGGGAuacucacCCGCCGCGUGgGAGccaaCACCa -3'
miRNA:   3'- gCUCU-------GGCGGCGUAUgCUCuua-GUGG- -5'
10284 3' -52.3 NC_002687.1 + 240410 0.71 0.967879
Target:  5'- uCGAGcugcggaACaCGCUGcCAUGCGAG-GUCACCg -3'
miRNA:   3'- -GCUC-------UG-GCGGC-GUAUGCUCuUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 118457 0.71 0.968173
Target:  5'- -aAGAaCGCCGCA-GCGAagcaGAGUCACCg -3'
miRNA:   3'- gcUCUgGCGGCGUaUGCU----CUUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 11300 0.71 0.971015
Target:  5'- gCGGGACaguuGCCGCGUucaAgGAGA-UCGCCu -3'
miRNA:   3'- -GCUCUGg---CGGCGUA---UgCUCUuAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 18612 0.7 0.975905
Target:  5'- uGGGACCagaagcuGCCGCc-ACGGGGuUCGCCg -3'
miRNA:   3'- gCUCUGG-------CGGCGuaUGCUCUuAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 97904 0.7 0.978444
Target:  5'- aCGAGGCCacauGCCGaCAacACGAGAAUUuCCa -3'
miRNA:   3'- -GCUCUGG----CGGC-GUa-UGCUCUUAGuGG- -5'
10284 3' -52.3 NC_002687.1 + 296332 0.7 0.978444
Target:  5'- gCGucaACCGCaCGCAgugACGAGggUgACCc -3'
miRNA:   3'- -GCuc-UGGCG-GCGUa--UGCUCuuAgUGG- -5'
10284 3' -52.3 NC_002687.1 + 238322 0.7 0.980576
Target:  5'- aGuGAUCGUCGUggACGAGu-UCACCa -3'
miRNA:   3'- gCuCUGGCGGCGuaUGCUCuuAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 254727 0.7 0.982546
Target:  5'- -cAGGuuGCCGUGgcUGCGAG-GUCACCg -3'
miRNA:   3'- gcUCUggCGGCGU--AUGCUCuUAGUGG- -5'
10284 3' -52.3 NC_002687.1 + 283064 0.7 0.982546
Target:  5'- gGAGACUGCCGCuauccuccGCGAGAAgaugaACg -3'
miRNA:   3'- gCUCUGGCGGCGua------UGCUCUUag---UGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.