miRNA: 3'- -GUGC-------AGUaGCUGcu---CGUGUACGCGUG- -5'
miRNA: 3'- guGCAGUAGCUG-CUCGUGuaCGCGUg -5'
miRNA: 3'- guGCAGUAGC--UGCUCGUGuaC-GCGUg -5'
miRNA: 3'- -GUGCA-GUA---------GCUGCU--CG--UGUACGCGUG- -5'
miRNA: 3'- guGCAGUAGCU-----GCUCG-UGUACGCGUg -5'
Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10286 | 3' | -53.5 | NC_002687.1 | + | 283544 | 0.66 | 0.995223 |
|
Target: 5'- uCACGagggggcUCG-CGACacuauGCACAUGUGCACg -3' miRNA: 3'- -GUGC-------AGUaGCUGcu---CGUGUACGCGUG- -5' |
|||||||
| 10286 | 3' | -53.5 | NC_002687.1 | + | 293357 | 0.72 | 0.90199 |
|
Target: 5'- -gUGUCAUCGGCaGAGCGC--GCGCAg -3' miRNA: 3'- guGCAGUAGCUG-CUCGUGuaCGCGUg -5' |
|||||||
| 10286 | 3' | -53.5 | NC_002687.1 | + | 323374 | 0.68 | 0.986682 |
|
Target: 5'- -gUGUCAUCGcaAUGAGCACggGuCGCAg -3' miRNA: 3'- guGCAGUAGC--UGCUCGUGuaC-GCGUg -5' |
|||||||
| 10286 | 3' | -53.5 | NC_002687.1 | + | 330950 | 0.66 | 0.995291 |
|
Target: 5'- cCACGUaCGUgaaucgccaCGACGGcuGCcgGCAUGUGCACg -3' miRNA: 3'- -GUGCA-GUA---------GCUGCU--CG--UGUACGCGUG- -5' |
|||||||
| 10286 | 3' | -53.5 | NC_002687.1 | + | 332210 | 0.69 | 0.969212 |
|
Target: 5'- -cCGUCGUUGGaggcaUGAGCaACGUGCGCGg -3' miRNA: 3'- guGCAGUAGCU-----GCUCG-UGUACGCGUg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home