Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10286 | 3' | -53.5 | NC_002687.1 | + | 129786 | 0.66 | 0.993762 |
Target: 5'- uGCGUCGUUccCGGGCGUgAUGUGCACa -3' miRNA: 3'- gUGCAGUAGcuGCUCGUG-UACGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 133216 | 0.69 | 0.966224 |
Target: 5'- cCAUGUCcUUGAUGAGCGCgcccugcuugacGUGCGCcCa -3' miRNA: 3'- -GUGCAGuAGCUGCUCGUG------------UACGCGuG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 143030 | 0.66 | 0.996501 |
Target: 5'- gCACGUCGaUGAagcccuCGGGgGCAUGCGCc- -3' miRNA: 3'- -GUGCAGUaGCU------GCUCgUGUACGCGug -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 145484 | 0.66 | 0.99457 |
Target: 5'- gCGCGcC-UCGGCGAGCAgAUcggcaaguucGCGUACu -3' miRNA: 3'- -GUGCaGuAGCUGCUCGUgUA----------CGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 155497 | 0.69 | 0.972006 |
Target: 5'- cCGCGUCGUCGGCGuacGC-CAUuaGUACc -3' miRNA: 3'- -GUGCAGUAGCUGCu--CGuGUAcgCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 156070 | 0.68 | 0.98506 |
Target: 5'- cCAUGgCGUCGACGucGCACAUGgCGUg- -3' miRNA: 3'- -GUGCaGUAGCUGCu-CGUGUAC-GCGug -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 161408 | 0.74 | 0.813734 |
Target: 5'- -cCGUCGUCGGaacuguCGaAGCACGUGCGCGa -3' miRNA: 3'- guGCAGUAGCU------GC-UCGUGUACGCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 184433 | 0.69 | 0.969212 |
Target: 5'- gACGUguaucccaaAUCGGCGAGUguauGCAUGuCGCGCa -3' miRNA: 3'- gUGCAg--------UAGCUGCUCG----UGUAC-GCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 198660 | 0.67 | 0.988164 |
Target: 5'- gGCGuUCAcgagccUCGAaguggGAGCGCucAUGCGCACa -3' miRNA: 3'- gUGC-AGU------AGCUg----CUCGUG--UACGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 199616 | 0.69 | 0.969212 |
Target: 5'- -gUGUCAaccUCGACGGGCGCAcuuugaucgagcUGUGCGa -3' miRNA: 3'- guGCAGU---AGCUGCUCGUGU------------ACGCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 200536 | 0.66 | 0.993762 |
Target: 5'- gCAUGUCAaCGACGcgguGCACAgucgccucCGCACa -3' miRNA: 3'- -GUGCAGUaGCUGCu---CGUGUac------GCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 200802 | 0.66 | 0.996501 |
Target: 5'- uGCGUCugcacCGAgGcGCACGaggGCGCGCa -3' miRNA: 3'- gUGCAGua---GCUgCuCGUGUa--CGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 233632 | 0.68 | 0.983292 |
Target: 5'- aGCG-CAgaaGAUG-GCACGUGCGCAa -3' miRNA: 3'- gUGCaGUag-CUGCuCGUGUACGCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 233889 | 0.66 | 0.993762 |
Target: 5'- aGCaGUUGgaaaaGGCG-GCACAUGCGUACg -3' miRNA: 3'- gUG-CAGUag---CUGCuCGUGUACGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 238528 | 0.68 | 0.977037 |
Target: 5'- aACGUCAUCGuCGu---CAUGUGCGCc -3' miRNA: 3'- gUGCAGUAGCuGCucguGUACGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 253420 | 0.69 | 0.962708 |
Target: 5'- gCGCGUCAccgauguUCGACGA-CACGUuGCGUAUu -3' miRNA: 3'- -GUGCAGU-------AGCUGCUcGUGUA-CGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 256972 | 0.7 | 0.948216 |
Target: 5'- -uUGUCGUUGACGAuGCGC--GUGCACg -3' miRNA: 3'- guGCAGUAGCUGCU-CGUGuaCGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 267837 | 0.7 | 0.949852 |
Target: 5'- gGCgGUCGUCuGugGAGCGCGcgguacaguucuugaUGCGCAg -3' miRNA: 3'- gUG-CAGUAG-CugCUCGUGU---------------ACGCGUg -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 270678 | 0.7 | 0.943972 |
Target: 5'- gGCGUC--UGugGAGCGC--GCGCGCg -3' miRNA: 3'- gUGCAGuaGCugCUCGUGuaCGCGUG- -5' |
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10286 | 3' | -53.5 | NC_002687.1 | + | 276144 | 0.72 | 0.895742 |
Target: 5'- uCGCGccggCGUCGAUGAGC-C-UGCGCAUg -3' miRNA: 3'- -GUGCa---GUAGCUGCUCGuGuACGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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