miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10286 3' -53.5 NC_002687.1 + 4335 1.11 0.008477
Target:  5'- aCACGUCAUCGACGAGCACAUGCGCACg -3'
miRNA:   3'- -GUGCAGUAGCUGCUCGUGUACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 17370 0.67 0.989516
Target:  5'- gGCaGUCcggCGGCGuuuuGCGCA-GCGCACa -3'
miRNA:   3'- gUG-CAGua-GCUGCu---CGUGUaCGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 23744 0.67 0.989516
Target:  5'- -cUGU-GUCGAgGAGCugAuggUGCGCACa -3'
miRNA:   3'- guGCAgUAGCUgCUCGugU---ACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 40406 0.73 0.860599
Target:  5'- cCAUGUCcuGUCGGCGGGgGCGuugaccaaaagcuUGCGCACc -3'
miRNA:   3'- -GUGCAG--UAGCUGCUCgUGU-------------ACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 41911 0.66 0.995933
Target:  5'- gACGUCAUUGGCccuuccaugGAugGCGUGCGCAa -3'
miRNA:   3'- gUGCAGUAGCUG---------CUcgUGUACGCGUg -5'
10286 3' -53.5 NC_002687.1 + 45765 0.73 0.875717
Target:  5'- aCGCuUCGUCGA-GAGCAUuuUGCGCACc -3'
miRNA:   3'- -GUGcAGUAGCUgCUCGUGu-ACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 65870 0.67 0.990744
Target:  5'- cCACGUCAagGACGAGCugGUagGUAa -3'
miRNA:   3'- -GUGCAGUagCUGCUCGugUAcgCGUg -5'
10286 3' -53.5 NC_002687.1 + 67876 0.66 0.996501
Target:  5'- gGgGUCgaacuugcuGUUGACGuGCACAacGCGCGCa -3'
miRNA:   3'- gUgCAG---------UAGCUGCuCGUGUa-CGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 68954 0.69 0.966224
Target:  5'- -cUGUCGUUGGCGaAGUAgGaGCGCACg -3'
miRNA:   3'- guGCAGUAGCUGC-UCGUgUaCGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 74051 0.7 0.948216
Target:  5'- uGCGcCGUCGaccuaugucucuGCGAGCGCuugGCGUACu -3'
miRNA:   3'- gUGCaGUAGC------------UGCUCGUGua-CGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 76333 0.66 0.993762
Target:  5'- gCACGUCgguguccagcauGUCGACGucaaAGUACAUGCagaaCACg -3'
miRNA:   3'- -GUGCAG------------UAGCUGC----UCGUGUACGc---GUG- -5'
10286 3' -53.5 NC_002687.1 + 77444 0.69 0.974612
Target:  5'- gACGUcCGUCGACggGAGCGuCGUGCcaGCAUg -3'
miRNA:   3'- gUGCA-GUAGCUG--CUCGU-GUACG--CGUG- -5'
10286 3' -53.5 NC_002687.1 + 80118 0.74 0.822096
Target:  5'- gCGCGUCAggaUCGACGAcCAUcaGCGCACa -3'
miRNA:   3'- -GUGCAGU---AGCUGCUcGUGuaCGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 80789 0.67 0.989516
Target:  5'- aACGUCGguUCG-CGGGCGCAgGUaauGCACg -3'
miRNA:   3'- gUGCAGU--AGCuGCUCGUGUaCG---CGUG- -5'
10286 3' -53.5 NC_002687.1 + 85351 0.66 0.995291
Target:  5'- -cUGUUggCGAUGAGCGCGcacgGCGCGa -3'
miRNA:   3'- guGCAGuaGCUGCUCGUGUa---CGCGUg -5'
10286 3' -53.5 NC_002687.1 + 94620 0.72 0.895742
Target:  5'- uCAUGaUCGUCGACGaAGCGCAucacgucugUGcCGCGCa -3'
miRNA:   3'- -GUGC-AGUAGCUGC-UCGUGU---------AC-GCGUG- -5'
10286 3' -53.5 NC_002687.1 + 107674 0.68 0.986682
Target:  5'- aACGUUuUCGGCGAgGUACAcGUGCAa -3'
miRNA:   3'- gUGCAGuAGCUGCU-CGUGUaCGCGUg -5'
10286 3' -53.5 NC_002687.1 + 109018 0.68 0.982732
Target:  5'- cCGCGUCuugcgucugaucuuGUCGGCGgaAGCAUcgGCGCu- -3'
miRNA:   3'- -GUGCAG--------------UAGCUGC--UCGUGuaCGCGug -5'
10286 3' -53.5 NC_002687.1 + 110415 0.66 0.99457
Target:  5'- -cCGUCGUCGAC-AGCACAcacgacaucUaCGCACu -3'
miRNA:   3'- guGCAGUAGCUGcUCGUGU---------AcGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 123426 0.67 0.989124
Target:  5'- gACGUCgacGUCcAUGAGCAUgugaauggccucggAUGCGCACc -3'
miRNA:   3'- gUGCAG---UAGcUGCUCGUG--------------UACGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.