miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10286 3' -53.5 NC_002687.1 + 4335 1.11 0.008477
Target:  5'- aCACGUCAUCGACGAGCACAUGCGCACg -3'
miRNA:   3'- -GUGCAGUAGCUGCUCGUGUACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 161408 0.74 0.813734
Target:  5'- -cCGUCGUCGGaacuguCGaAGCACGUGCGCGa -3'
miRNA:   3'- guGCAGUAGCU------GC-UCGUGUACGCGUg -5'
10286 3' -53.5 NC_002687.1 + 80118 0.74 0.822096
Target:  5'- gCGCGUCAggaUCGACGAcCAUcaGCGCACa -3'
miRNA:   3'- -GUGCAGU---AGCUGCUcGUGuaCGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 40406 0.73 0.860599
Target:  5'- cCAUGUCcuGUCGGCGGGgGCGuugaccaaaagcuUGCGCACc -3'
miRNA:   3'- -GUGCAG--UAGCUGCUCgUGU-------------ACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 45765 0.73 0.875717
Target:  5'- aCGCuUCGUCGA-GAGCAUuuUGCGCACc -3'
miRNA:   3'- -GUGcAGUAGCUgCUCGUGu-ACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 276144 0.72 0.895742
Target:  5'- uCGCGccggCGUCGAUGAGC-C-UGCGCAUg -3'
miRNA:   3'- -GUGCa---GUAGCUGCUCGuGuACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 94620 0.72 0.895742
Target:  5'- uCAUGaUCGUCGACGaAGCGCAucacgucugUGcCGCGCa -3'
miRNA:   3'- -GUGC-AGUAGCUGC-UCGUGU---------AC-GCGUG- -5'
10286 3' -53.5 NC_002687.1 + 293357 0.72 0.90199
Target:  5'- -gUGUCAUCGGCaGAGCGC--GCGCAg -3'
miRNA:   3'- guGCAGUAGCUG-CUCGUGuaCGCGUg -5'
10286 3' -53.5 NC_002687.1 + 270678 0.7 0.943972
Target:  5'- gGCGUC--UGugGAGCGC--GCGCGCg -3'
miRNA:   3'- gUGCAGuaGCugCUCGUGuaCGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 256972 0.7 0.948216
Target:  5'- -uUGUCGUUGACGAuGCGC--GUGCACg -3'
miRNA:   3'- guGCAGUAGCUGCU-CGUGuaCGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 74051 0.7 0.948216
Target:  5'- uGCGcCGUCGaccuaugucucuGCGAGCGCuugGCGUACu -3'
miRNA:   3'- gUGCaGUAGC------------UGCUCGUGua-CGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 267837 0.7 0.949852
Target:  5'- gGCgGUCGUCuGugGAGCGCGcgguacaguucuugaUGCGCAg -3'
miRNA:   3'- gUG-CAGUAG-CugCUCGUGU---------------ACGCGUg -5'
10286 3' -53.5 NC_002687.1 + 253420 0.69 0.962708
Target:  5'- gCGCGUCAccgauguUCGACGA-CACGUuGCGUAUu -3'
miRNA:   3'- -GUGCAGU-------AGCUGCUcGUGUA-CGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 133216 0.69 0.966224
Target:  5'- cCAUGUCcUUGAUGAGCGCgcccugcuugacGUGCGCcCa -3'
miRNA:   3'- -GUGCAGuAGCUGCUCGUG------------UACGCGuG- -5'
10286 3' -53.5 NC_002687.1 + 68954 0.69 0.966224
Target:  5'- -cUGUCGUUGGCGaAGUAgGaGCGCACg -3'
miRNA:   3'- guGCAGUAGCUGC-UCGUgUaCGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 199616 0.69 0.969212
Target:  5'- -gUGUCAaccUCGACGGGCGCAcuuugaucgagcUGUGCGa -3'
miRNA:   3'- guGCAGU---AGCUGCUCGUGU------------ACGCGUg -5'
10286 3' -53.5 NC_002687.1 + 332210 0.69 0.969212
Target:  5'- -cCGUCGUUGGaggcaUGAGCaACGUGCGCGg -3'
miRNA:   3'- guGCAGUAGCU-----GCUCG-UGUACGCGUg -5'
10286 3' -53.5 NC_002687.1 + 184433 0.69 0.969212
Target:  5'- gACGUguaucccaaAUCGGCGAGUguauGCAUGuCGCGCa -3'
miRNA:   3'- gUGCAg--------UAGCUGCUCG----UGUAC-GCGUG- -5'
10286 3' -53.5 NC_002687.1 + 155497 0.69 0.972006
Target:  5'- cCGCGUCGUCGGCGuacGC-CAUuaGUACc -3'
miRNA:   3'- -GUGCAGUAGCUGCu--CGuGUAcgCGUG- -5'
10286 3' -53.5 NC_002687.1 + 77444 0.69 0.974612
Target:  5'- gACGUcCGUCGACggGAGCGuCGUGCcaGCAUg -3'
miRNA:   3'- gUGCA-GUAGCUG--CUCGU-GUACG--CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.