miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10286 3' -53.5 NC_002687.1 + 332210 0.69 0.969212
Target:  5'- -cCGUCGUUGGaggcaUGAGCaACGUGCGCGg -3'
miRNA:   3'- guGCAGUAGCU-----GCUCG-UGUACGCGUg -5'
10286 3' -53.5 NC_002687.1 + 330950 0.66 0.995291
Target:  5'- cCACGUaCGUgaaucgccaCGACGGcuGCcgGCAUGUGCACg -3'
miRNA:   3'- -GUGCA-GUA---------GCUGCU--CG--UGUACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 323374 0.68 0.986682
Target:  5'- -gUGUCAUCGcaAUGAGCACggGuCGCAg -3'
miRNA:   3'- guGCAGUAGC--UGCUCGUGuaC-GCGUg -5'
10286 3' -53.5 NC_002687.1 + 293357 0.72 0.90199
Target:  5'- -gUGUCAUCGGCaGAGCGC--GCGCAg -3'
miRNA:   3'- guGCAGUAGCUG-CUCGUGuaCGCGUg -5'
10286 3' -53.5 NC_002687.1 + 283544 0.66 0.995223
Target:  5'- uCACGagggggcUCG-CGACacuauGCACAUGUGCACg -3'
miRNA:   3'- -GUGC-------AGUaGCUGcu---CGUGUACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 276144 0.72 0.895742
Target:  5'- uCGCGccggCGUCGAUGAGC-C-UGCGCAUg -3'
miRNA:   3'- -GUGCa---GUAGCUGCUCGuGuACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 270678 0.7 0.943972
Target:  5'- gGCGUC--UGugGAGCGC--GCGCGCg -3'
miRNA:   3'- gUGCAGuaGCugCUCGUGuaCGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 267837 0.7 0.949852
Target:  5'- gGCgGUCGUCuGugGAGCGCGcgguacaguucuugaUGCGCAg -3'
miRNA:   3'- gUG-CAGUAG-CugCUCGUGU---------------ACGCGUg -5'
10286 3' -53.5 NC_002687.1 + 256972 0.7 0.948216
Target:  5'- -uUGUCGUUGACGAuGCGC--GUGCACg -3'
miRNA:   3'- guGCAGUAGCUGCU-CGUGuaCGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 253420 0.69 0.962708
Target:  5'- gCGCGUCAccgauguUCGACGA-CACGUuGCGUAUu -3'
miRNA:   3'- -GUGCAGU-------AGCUGCUcGUGUA-CGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 238528 0.68 0.977037
Target:  5'- aACGUCAUCGuCGu---CAUGUGCGCc -3'
miRNA:   3'- gUGCAGUAGCuGCucguGUACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 233889 0.66 0.993762
Target:  5'- aGCaGUUGgaaaaGGCG-GCACAUGCGUACg -3'
miRNA:   3'- gUG-CAGUag---CUGCuCGUGUACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 233632 0.68 0.983292
Target:  5'- aGCG-CAgaaGAUG-GCACGUGCGCAa -3'
miRNA:   3'- gUGCaGUag-CUGCuCGUGUACGCGUg -5'
10286 3' -53.5 NC_002687.1 + 200802 0.66 0.996501
Target:  5'- uGCGUCugcacCGAgGcGCACGaggGCGCGCa -3'
miRNA:   3'- gUGCAGua---GCUgCuCGUGUa--CGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 200536 0.66 0.993762
Target:  5'- gCAUGUCAaCGACGcgguGCACAgucgccucCGCACa -3'
miRNA:   3'- -GUGCAGUaGCUGCu---CGUGUac------GCGUG- -5'
10286 3' -53.5 NC_002687.1 + 199616 0.69 0.969212
Target:  5'- -gUGUCAaccUCGACGGGCGCAcuuugaucgagcUGUGCGa -3'
miRNA:   3'- guGCAGU---AGCUGCUCGUGU------------ACGCGUg -5'
10286 3' -53.5 NC_002687.1 + 198660 0.67 0.988164
Target:  5'- gGCGuUCAcgagccUCGAaguggGAGCGCucAUGCGCACa -3'
miRNA:   3'- gUGC-AGU------AGCUg----CUCGUG--UACGCGUG- -5'
10286 3' -53.5 NC_002687.1 + 184433 0.69 0.969212
Target:  5'- gACGUguaucccaaAUCGGCGAGUguauGCAUGuCGCGCa -3'
miRNA:   3'- gUGCAg--------UAGCUGCUCG----UGUAC-GCGUG- -5'
10286 3' -53.5 NC_002687.1 + 161408 0.74 0.813734
Target:  5'- -cCGUCGUCGGaacuguCGaAGCACGUGCGCGa -3'
miRNA:   3'- guGCAGUAGCU------GC-UCGUGUACGCGUg -5'
10286 3' -53.5 NC_002687.1 + 156070 0.68 0.98506
Target:  5'- cCAUGgCGUCGACGucGCACAUGgCGUg- -3'
miRNA:   3'- -GUGCaGUAGCUGCu-CGUGUAC-GCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.