Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10289 | 3' | -54.9 | NC_002687.1 | + | 128606 | 0.67 | 0.970306 |
Target: 5'- gCGCGCCCGCCuccgauccgcuagcuACAUCgUCGAUCuGAUGu -3' miRNA: 3'- -GUGCGGGUGG---------------UGUAG-GGUUAGcCUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 158952 | 0.68 | 0.959643 |
Target: 5'- uCACGCCCAaggguuCCACGcgCCCGAcaaCGGAg- -3' miRNA: 3'- -GUGCGGGU------GGUGUa-GGGUUa--GCCUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 35823 | 0.69 | 0.948263 |
Target: 5'- gCGCGCCCcucuccgucaACCACAcugCCCA--CGGGUGg -3' miRNA: 3'- -GUGCGGG----------UGGUGUa--GGGUuaGCCUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 20551 | 0.7 | 0.919615 |
Target: 5'- aGCGUCCAgCACAccaCCCAgauGUCGGAUu -3' miRNA: 3'- gUGCGGGUgGUGUa--GGGU---UAGCCUAu -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 205318 | 0.71 | 0.861901 |
Target: 5'- gACGUCCACaCGCcgCCCAGUCGcaGGUGu -3' miRNA: 3'- gUGCGGGUG-GUGuaGGGUUAGC--CUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 199768 | 0.66 | 0.983217 |
Target: 5'- -gUGCCCGCucguUugGUCCCGAggGGAUAc -3' miRNA: 3'- guGCGGGUG----GugUAGGGUUagCCUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 146021 | 0.66 | 0.989442 |
Target: 5'- uGCG-CCGCCGCuUCUCcGUCGGAc- -3' miRNA: 3'- gUGCgGGUGGUGuAGGGuUAGCCUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 211629 | 0.66 | 0.986605 |
Target: 5'- -uCGCCCucguacACCGCAagCCCAAucUCGGAc- -3' miRNA: 3'- guGCGGG------UGGUGUa-GGGUU--AGCCUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 94642 | 0.66 | 0.984814 |
Target: 5'- uCACGUCUguGCCGCGcaacucUCCCGaugugucacaaaaGUCGGAUGu -3' miRNA: 3'- -GUGCGGG--UGGUGU------AGGGU-------------UAGCCUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 302942 | 0.67 | 0.981298 |
Target: 5'- cCACGCaCCGcCCACGUgcaaCCCc-UCGGGUAa -3' miRNA: 3'- -GUGCG-GGU-GGUGUA----GGGuuAGCCUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 114420 | 0.67 | 0.976973 |
Target: 5'- gGCuGCCCACCGCuacCCCaAGUCGcGAa- -3' miRNA: 3'- gUG-CGGGUGGUGua-GGG-UUAGC-CUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 231276 | 0.66 | 0.989442 |
Target: 5'- cCACuCCCACCACuUCCCc--CGGGc- -3' miRNA: 3'- -GUGcGGGUGGUGuAGGGuuaGCCUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 160667 | 0.67 | 0.981298 |
Target: 5'- gCACGUCCACCACGacUCCUuccGUCuGAa- -3' miRNA: 3'- -GUGCGGGUGGUGU--AGGGu--UAGcCUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 62200 | 0.66 | 0.984984 |
Target: 5'- gAUGaCUCugUGCuuuUCCCGGUCGGAUGc -3' miRNA: 3'- gUGC-GGGugGUGu--AGGGUUAGCCUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 297389 | 0.66 | 0.989442 |
Target: 5'- cCAUGCUCAUCGCGaCCCGAUU-GAUAa -3' miRNA: 3'- -GUGCGGGUGGUGUaGGGUUAGcCUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 292438 | 0.68 | 0.959643 |
Target: 5'- cCGCGgCCGCCACcgcUUCCAGUUGGcgAg -3' miRNA: 3'- -GUGCgGGUGGUGu--AGGGUUAGCCuaU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 69851 | 0.74 | 0.724289 |
Target: 5'- gACGacaaCCACCACGUCgguuCCAAUCGGAa- -3' miRNA: 3'- gUGCg---GGUGGUGUAG----GGUUAGCCUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 66015 | 0.71 | 0.85371 |
Target: 5'- aCACGUCCACCACGUCuccgacaaagucgCCAAUaGGAa- -3' miRNA: 3'- -GUGCGGGUGGUGUAG-------------GGUUAgCCUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 153764 | 0.71 | 0.876189 |
Target: 5'- aACGCUaugaauuauucaUACCACA-CCUAGUCGGAUAu -3' miRNA: 3'- gUGCGG------------GUGGUGUaGGGUUAGCCUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 133440 | 0.67 | 0.96917 |
Target: 5'- gACGCCCACUACAagaauuUCaCCGAgagUGGAc- -3' miRNA: 3'- gUGCGGGUGGUGU------AG-GGUUa--GCCUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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