Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10289 | 3' | -54.9 | NC_002687.1 | + | 217939 | 0.66 | 0.983217 |
Target: 5'- -cCGCCCGCCACcccGUUgCGGUaCGGAUc -3' miRNA: 3'- guGCGGGUGGUG---UAGgGUUA-GCCUAu -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 247921 | 0.66 | 0.983032 |
Target: 5'- gACGCCgGCUguguuuuGCAUCCCcggagCGGGUGg -3' miRNA: 3'- gUGCGGgUGG-------UGUAGGGuua--GCCUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 200343 | 0.66 | 0.982658 |
Target: 5'- uGCGCUCACCACGagcugaccacUCgCCuggccacucgcuuuGGUCGGAUAa -3' miRNA: 3'- gUGCGGGUGGUGU----------AG-GG--------------UUAGCCUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 224466 | 0.67 | 0.981298 |
Target: 5'- aGCGCcaccgCCACCGCGUCCCGAaCGu--- -3' miRNA: 3'- gUGCG-----GGUGGUGUAGGGUUaGCcuau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 13807 | 0.67 | 0.976973 |
Target: 5'- aCACGCCCugCGCAcgucuUCCCGuugCGuGGc- -3' miRNA: 3'- -GUGCGGGugGUGU-----AGGGUua-GC-CUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 308784 | 0.67 | 0.974554 |
Target: 5'- gCGCGCCCGCC-CcgCCgGGgucgcCGGGUGg -3' miRNA: 3'- -GUGCGGGUGGuGuaGGgUUa----GCCUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 119578 | 0.67 | 0.971955 |
Target: 5'- gACaaCCugUACAUCCCuGUCGGAg- -3' miRNA: 3'- gUGcgGGugGUGUAGGGuUAGCCUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 133440 | 0.67 | 0.96917 |
Target: 5'- gACGCCCACUACAagaauuUCaCCGAgagUGGAc- -3' miRNA: 3'- gUGCGGGUGGUGU------AG-GGUUa--GCCUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 153764 | 0.71 | 0.876189 |
Target: 5'- aACGCUaugaauuauucaUACCACA-CCUAGUCGGAUAu -3' miRNA: 3'- gUGCGG------------GUGGUGUaGGGUUAGCCUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 66015 | 0.71 | 0.85371 |
Target: 5'- aCACGUCCACCACGUCuccgacaaagucgCCAAUaGGAa- -3' miRNA: 3'- -GUGCGGGUGGUGUAG-------------GGUUAgCCUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 69851 | 0.74 | 0.724289 |
Target: 5'- gACGacaaCCACCACGUCgguuCCAAUCGGAa- -3' miRNA: 3'- gUGCg---GGUGGUGUAG----GGUUAGCCUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 277085 | 0.66 | 0.989442 |
Target: 5'- aCACGCagCCGCCACAgcCCCAGcuUCGuGAc- -3' miRNA: 3'- -GUGCG--GGUGGUGUa-GGGUU--AGC-CUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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