Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10289 | 3' | -54.9 | NC_002687.1 | + | 217939 | 0.66 | 0.983217 |
Target: 5'- -cCGCCCGCCACcccGUUgCGGUaCGGAUc -3' miRNA: 3'- guGCGGGUGGUG---UAGgGUUA-GCCUAu -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 199768 | 0.66 | 0.983217 |
Target: 5'- -gUGCCCGCucguUugGUCCCGAggGGAUAc -3' miRNA: 3'- guGCGGGUG----GugUAGGGUUagCCUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 182961 | 0.66 | 0.983217 |
Target: 5'- cCACGCCCACCAagcuUUUCGAaaGGAUc -3' miRNA: 3'- -GUGCGGGUGGUgu--AGGGUUagCCUAu -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 94642 | 0.66 | 0.984814 |
Target: 5'- uCACGUCUguGCCGCGcaacucUCCCGaugugucacaaaaGUCGGAUGu -3' miRNA: 3'- -GUGCGGG--UGGUGU------AGGGU-------------UAGCCUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 201327 | 0.66 | 0.984984 |
Target: 5'- aCACGCCCGCCugccCcgCCCGAgcgCGcAUGa -3' miRNA: 3'- -GUGCGGGUGGu---GuaGGGUUa--GCcUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 62200 | 0.66 | 0.984984 |
Target: 5'- gAUGaCUCugUGCuuuUCCCGGUCGGAUGc -3' miRNA: 3'- gUGC-GGGugGUGu--AGGGUUAGCCUAU- -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 211629 | 0.66 | 0.986605 |
Target: 5'- -uCGCCCucguacACCGCAagCCCAAucUCGGAc- -3' miRNA: 3'- guGCGGG------UGGUGUa-GGGUU--AGCCUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 231276 | 0.66 | 0.989442 |
Target: 5'- cCACuCCCACCACuUCCCc--CGGGc- -3' miRNA: 3'- -GUGcGGGUGGUGuAGGGuuaGCCUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 146021 | 0.66 | 0.989442 |
Target: 5'- uGCG-CCGCCGCuUCUCcGUCGGAc- -3' miRNA: 3'- gUGCgGGUGGUGuAGGGuUAGCCUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 277085 | 0.66 | 0.989442 |
Target: 5'- aCACGCagCCGCCACAgcCCCAGcuUCGuGAc- -3' miRNA: 3'- -GUGCG--GGUGGUGUa-GGGUU--AGC-CUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 150385 | 0.66 | 0.989442 |
Target: 5'- gGgGUgUACguCAUCCCAAUCGGGa- -3' miRNA: 3'- gUgCGgGUGguGUAGGGUUAGCCUau -5' |
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10289 | 3' | -54.9 | NC_002687.1 | + | 297389 | 0.66 | 0.989442 |
Target: 5'- cCAUGCUCAUCGCGaCCCGAUU-GAUAa -3' miRNA: 3'- -GUGCGGGUGGUGUaGGGUUAGcCUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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