miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10289 3' -54.9 NC_002687.1 + 119578 0.67 0.971955
Target:  5'- gACaaCCugUACAUCCCuGUCGGAg- -3'
miRNA:   3'- gUGcgGGugGUGUAGGGuUAGCCUau -5'
10289 3' -54.9 NC_002687.1 + 128606 0.67 0.970306
Target:  5'- gCGCGCCCGCCuccgauccgcuagcuACAUCgUCGAUCuGAUGu -3'
miRNA:   3'- -GUGCGGGUGG---------------UGUAG-GGUUAGcCUAU- -5'
10289 3' -54.9 NC_002687.1 + 133440 0.67 0.96917
Target:  5'- gACGCCCACUACAagaauuUCaCCGAgagUGGAc- -3'
miRNA:   3'- gUGCGGGUGGUGU------AG-GGUUa--GCCUau -5'
10289 3' -54.9 NC_002687.1 + 158952 0.68 0.959643
Target:  5'- uCACGCCCAaggguuCCACGcgCCCGAcaaCGGAg- -3'
miRNA:   3'- -GUGCGGGU------GGUGUa-GGGUUa--GCCUau -5'
10289 3' -54.9 NC_002687.1 + 292438 0.68 0.959643
Target:  5'- cCGCGgCCGCCACcgcUUCCAGUUGGcgAg -3'
miRNA:   3'- -GUGCgGGUGGUGu--AGGGUUAGCCuaU- -5'
10289 3' -54.9 NC_002687.1 + 35823 0.69 0.948263
Target:  5'- gCGCGCCCcucuccgucaACCACAcugCCCA--CGGGUGg -3'
miRNA:   3'- -GUGCGGG----------UGGUGUa--GGGUuaGCCUAU- -5'
10289 3' -54.9 NC_002687.1 + 20551 0.7 0.919615
Target:  5'- aGCGUCCAgCACAccaCCCAgauGUCGGAUu -3'
miRNA:   3'- gUGCGGGUgGUGUa--GGGU---UAGCCUAu -5'
10289 3' -54.9 NC_002687.1 + 153764 0.71 0.876189
Target:  5'- aACGCUaugaauuauucaUACCACA-CCUAGUCGGAUAu -3'
miRNA:   3'- gUGCGG------------GUGGUGUaGGGUUAGCCUAU- -5'
10289 3' -54.9 NC_002687.1 + 205318 0.71 0.861901
Target:  5'- gACGUCCACaCGCcgCCCAGUCGcaGGUGu -3'
miRNA:   3'- gUGCGGGUG-GUGuaGGGUUAGC--CUAU- -5'
10289 3' -54.9 NC_002687.1 + 66015 0.71 0.85371
Target:  5'- aCACGUCCACCACGUCuccgacaaagucgCCAAUaGGAa- -3'
miRNA:   3'- -GUGCGGGUGGUGUAG-------------GGUUAgCCUau -5'
10289 3' -54.9 NC_002687.1 + 69851 0.74 0.724289
Target:  5'- gACGacaaCCACCACGUCgguuCCAAUCGGAa- -3'
miRNA:   3'- gUGCg---GGUGGUGUAG----GGUUAGCCUau -5'
10289 3' -54.9 NC_002687.1 + 10976 1.06 0.01106
Target:  5'- cCACGCCCACCACAUCCCAAUCGGAUAu -3'
miRNA:   3'- -GUGCGGGUGGUGUAGGGUUAGCCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.