miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10289 3' -54.9 NC_002687.1 + 201327 0.66 0.984984
Target:  5'- aCACGCCCGCCugccCcgCCCGAgcgCGcAUGa -3'
miRNA:   3'- -GUGCGGGUGGu---GuaGGGUUa--GCcUAU- -5'
10289 3' -54.9 NC_002687.1 + 205318 0.71 0.861901
Target:  5'- gACGUCCACaCGCcgCCCAGUCGcaGGUGu -3'
miRNA:   3'- gUGCGGGUG-GUGuaGGGUUAGC--CUAU- -5'
10289 3' -54.9 NC_002687.1 + 211629 0.66 0.986605
Target:  5'- -uCGCCCucguacACCGCAagCCCAAucUCGGAc- -3'
miRNA:   3'- guGCGGG------UGGUGUa-GGGUU--AGCCUau -5'
10289 3' -54.9 NC_002687.1 + 217939 0.66 0.983217
Target:  5'- -cCGCCCGCCACcccGUUgCGGUaCGGAUc -3'
miRNA:   3'- guGCGGGUGGUG---UAGgGUUA-GCCUAu -5'
10289 3' -54.9 NC_002687.1 + 224466 0.67 0.981298
Target:  5'- aGCGCcaccgCCACCGCGUCCCGAaCGu--- -3'
miRNA:   3'- gUGCG-----GGUGGUGUAGGGUUaGCcuau -5'
10289 3' -54.9 NC_002687.1 + 231276 0.66 0.989442
Target:  5'- cCACuCCCACCACuUCCCc--CGGGc- -3'
miRNA:   3'- -GUGcGGGUGGUGuAGGGuuaGCCUau -5'
10289 3' -54.9 NC_002687.1 + 247921 0.66 0.983032
Target:  5'- gACGCCgGCUguguuuuGCAUCCCcggagCGGGUGg -3'
miRNA:   3'- gUGCGGgUGG-------UGUAGGGuua--GCCUAU- -5'
10289 3' -54.9 NC_002687.1 + 277085 0.66 0.989442
Target:  5'- aCACGCagCCGCCACAgcCCCAGcuUCGuGAc- -3'
miRNA:   3'- -GUGCG--GGUGGUGUa-GGGUU--AGC-CUau -5'
10289 3' -54.9 NC_002687.1 + 292438 0.68 0.959643
Target:  5'- cCGCGgCCGCCACcgcUUCCAGUUGGcgAg -3'
miRNA:   3'- -GUGCgGGUGGUGu--AGGGUUAGCCuaU- -5'
10289 3' -54.9 NC_002687.1 + 297389 0.66 0.989442
Target:  5'- cCAUGCUCAUCGCGaCCCGAUU-GAUAa -3'
miRNA:   3'- -GUGCGGGUGGUGUaGGGUUAGcCUAU- -5'
10289 3' -54.9 NC_002687.1 + 302942 0.67 0.981298
Target:  5'- cCACGCaCCGcCCACGUgcaaCCCc-UCGGGUAa -3'
miRNA:   3'- -GUGCG-GGU-GGUGUA----GGGuuAGCCUAU- -5'
10289 3' -54.9 NC_002687.1 + 308784 0.67 0.974554
Target:  5'- gCGCGCCCGCC-CcgCCgGGgucgcCGGGUGg -3'
miRNA:   3'- -GUGCGGGUGGuGuaGGgUUa----GCCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.