miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10292 3' -51.7 NC_002687.1 + 103401 0.66 0.999015
Target:  5'- gGCUGCAGC-CUUGGCGgccUUGGCug-CAg -3'
miRNA:   3'- -CGGCGUUGcGAACCGU---GACUGuaaGU- -5'
10292 3' -51.7 NC_002687.1 + 18221 1.11 0.011506
Target:  5'- gGCCGCAACGCUUGGCACUGACAUUCAu -3'
miRNA:   3'- -CGGCGUUGCGAACCGUGACUGUAAGU- -5'
10292 3' -51.7 NC_002687.1 + 17777 1.02 0.040069
Target:  5'- gGCUGCAACGCUUGGCAUUGACAUUCAc -3'
miRNA:   3'- -CGGCGUUGCGAACCGUGACUGUAAGU- -5'
10292 3' -51.7 NC_002687.1 + 18110 0.89 0.216043
Target:  5'- gGCUGCAACGCUUaGCAUUGACAUUCAc -3'
miRNA:   3'- -CGGCGUUGCGAAcCGUGACUGUAAGU- -5'
10292 3' -51.7 NC_002687.1 + 17999 0.82 0.498703
Target:  5'- gGCCGCAACGCUUGGaGCgGACAUcCAc -3'
miRNA:   3'- -CGGCGUUGCGAACCgUGaCUGUAaGU- -5'
10292 3' -51.7 NC_002687.1 + 17888 0.74 0.88769
Target:  5'- gGCCGCAACGCUUGG-AgUGuACAUcCAc -3'
miRNA:   3'- -CGGCGUUGCGAACCgUgAC-UGUAaGU- -5'
10292 3' -51.7 NC_002687.1 + 26403 0.73 0.906903
Target:  5'- --gGCu-CGCUUGGCACUGGCAUa-- -3'
miRNA:   3'- cggCGuuGCGAACCGUGACUGUAagu -5'
10292 3' -51.7 NC_002687.1 + 309927 0.71 0.956009
Target:  5'- gGuuGCAGCGCgggcGGCACcgccGACGUUCc -3'
miRNA:   3'- -CggCGUUGCGaa--CCGUGa---CUGUAAGu -5'
10292 3' -51.7 NC_002687.1 + 44252 0.69 0.98699
Target:  5'- cUCGCAGCGUUuuuuaUGGaCGCUGGC-UUCAu -3'
miRNA:   3'- cGGCGUUGCGA-----ACC-GUGACUGuAAGU- -5'
10292 3' -51.7 NC_002687.1 + 135619 0.69 0.989817
Target:  5'- aCCGCGACGCggugcagcgguUUGGCAacggggacauCUGGCAggCAu -3'
miRNA:   3'- cGGCGUUGCG-----------AACCGU----------GACUGUaaGU- -5'
10292 3' -51.7 NC_002687.1 + 145831 0.66 0.998812
Target:  5'- cGCCGaGGCGCgcgccggGGCGCUGGg--UCAg -3'
miRNA:   3'- -CGGCgUUGCGaa-----CCGUGACUguaAGU- -5'
10292 3' -51.7 NC_002687.1 + 244817 0.66 0.998812
Target:  5'- uGCCGCAACGgg-GGCACcGugAa--- -3'
miRNA:   3'- -CGGCGUUGCgaaCCGUGaCugUaagu -5'
10292 3' -51.7 NC_002687.1 + 238125 0.67 0.997977
Target:  5'- aGgCGCAcauCGCcaUGGuCGCUGGCAUUCc -3'
miRNA:   3'- -CgGCGUu--GCGa-ACC-GUGACUGUAAGu -5'
10292 3' -51.7 NC_002687.1 + 25569 0.68 0.995519
Target:  5'- uGCCGCAgaaccaGCgGCUUGGCACaaccgaGACAcgCGa -3'
miRNA:   3'- -CGGCGU------UG-CGAACCGUGa-----CUGUaaGU- -5'
10292 3' -51.7 NC_002687.1 + 298329 0.68 0.995519
Target:  5'- gGCCGCAACGCaagGGCGuuuguUUGAUGUg-- -3'
miRNA:   3'- -CGGCGUUGCGaa-CCGU-----GACUGUAagu -5'
10292 3' -51.7 NC_002687.1 + 87708 0.68 0.992139
Target:  5'- cGCCG-GGCGUgUGGCGCUGACc---- -3'
miRNA:   3'- -CGGCgUUGCGaACCGUGACUGuaagu -5'
10292 3' -51.7 NC_002687.1 + 315632 0.66 0.999188
Target:  5'- aGCCGCAugaaGCUUGGCugUcaccACcgUCc -3'
miRNA:   3'- -CGGCGUug--CGAACCGugAc---UGuaAGu -5'
10292 3' -51.7 NC_002687.1 + 224853 0.71 0.963117
Target:  5'- aGCCGcCGACGCggcGGCGCcGGCAcggUCGg -3'
miRNA:   3'- -CGGC-GUUGCGaa-CCGUGaCUGUa--AGU- -5'
10292 3' -51.7 NC_002687.1 + 255866 0.7 0.972213
Target:  5'- aGCC-CAACaGUgaggUGGCACUGACAgaCAu -3'
miRNA:   3'- -CGGcGUUG-CGa---ACCGUGACUGUaaGU- -5'
10292 3' -51.7 NC_002687.1 + 298372 0.7 0.977299
Target:  5'- uGCCGCGACGCUcgagcUGuGCuuUGAUAUUUc -3'
miRNA:   3'- -CGGCGUUGCGA-----AC-CGugACUGUAAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.