Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10293 | 5' | -56.1 | NC_002687.1 | + | 167875 | 0.68 | 0.950561 |
Target: 5'- uCCGCGGCG-CAacgGaUCA-CACCGCgCCu -3' miRNA: 3'- -GGUGCCGCaGUga-C-AGUaGUGGCG-GG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 308789 | 0.68 | 0.946186 |
Target: 5'- uCCACgaucgguGGUGUCGaguccaUCAUCGCCGCCa -3' miRNA: 3'- -GGUG-------CCGCAGUgac---AGUAGUGGCGGg -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 159169 | 0.69 | 0.933459 |
Target: 5'- gCgACGGCgGUC-CgucGUUGUCGCCGCCg -3' miRNA: 3'- -GgUGCCG-CAGuGa--CAGUAGUGGCGGg -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 221828 | 0.69 | 0.933459 |
Target: 5'- -aAauGUGUCGCguuucucaucgGUCGUUGCCGCCCg -3' miRNA: 3'- ggUgcCGCAGUGa----------CAGUAGUGGCGGG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 202987 | 0.69 | 0.933459 |
Target: 5'- aCCACGGUGacUCACgacGaCAUCACCGgCa -3' miRNA: 3'- -GGUGCCGC--AGUGa--CaGUAGUGGCgGg -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 299652 | 0.69 | 0.933459 |
Target: 5'- gCGCGGCGguaaUCAUguUGUCGacccUCGUCGCCCg -3' miRNA: 3'- gGUGCCGC----AGUG--ACAGU----AGUGGCGGG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 18587 | 0.69 | 0.933459 |
Target: 5'- -gGCGGCGggggaaGCUGUgGUCAUC-CCCg -3' miRNA: 3'- ggUGCCGCag----UGACAgUAGUGGcGGG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 32349 | 0.69 | 0.928665 |
Target: 5'- aUCACGGUGUCGCUG-CcgUACCGa-- -3' miRNA: 3'- -GGUGCCGCAGUGACaGuaGUGGCggg -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 145682 | 0.69 | 0.923662 |
Target: 5'- cCCcUGGCGgacugcugCGCcGUCGUCACCGCg- -3' miRNA: 3'- -GGuGCCGCa-------GUGaCAGUAGUGGCGgg -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 307870 | 0.7 | 0.918451 |
Target: 5'- aCGCGGCGUgACUGggacCACCagGCCUg -3' miRNA: 3'- gGUGCCGCAgUGACaguaGUGG--CGGG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 103080 | 0.7 | 0.918451 |
Target: 5'- gCCGuCGcUGUCGCUGUCAcuUCACUGUCUu -3' miRNA: 3'- -GGU-GCcGCAGUGACAGU--AGUGGCGGG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 295145 | 0.7 | 0.913031 |
Target: 5'- uCCAUGGCGUC-CUG-CAgcaCACgGCgCCg -3' miRNA: 3'- -GGUGCCGCAGuGACaGUa--GUGgCG-GG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 50541 | 0.7 | 0.907404 |
Target: 5'- gCCACGGCGcUCACUucGUCGcagagacaUUACUGCgCa -3' miRNA: 3'- -GGUGCCGC-AGUGA--CAGU--------AGUGGCGgG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 51526 | 0.7 | 0.907404 |
Target: 5'- gCCACGGCGcUCACUucGUCGcagagacaUUACUGCgCa -3' miRNA: 3'- -GGUGCCGC-AGUGA--CAGU--------AGUGGCGgG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 49655 | 0.7 | 0.907404 |
Target: 5'- gCCACGGCGcUCACUucGUCGcagagacaUUACUGCgCa -3' miRNA: 3'- -GGUGCCGC-AGUGA--CAGU--------AGUGGCGgG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 72967 | 0.7 | 0.901571 |
Target: 5'- gCC-CcGCGUUGCUGUCgccGUCACCGUCUc -3' miRNA: 3'- -GGuGcCGCAGUGACAG---UAGUGGCGGG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 200477 | 0.71 | 0.869415 |
Target: 5'- -aACGGCG-CGCggccGUCGUCGCCgGCaCCa -3' miRNA: 3'- ggUGCCGCaGUGa---CAGUAGUGG-CG-GG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 307442 | 0.71 | 0.855222 |
Target: 5'- aUCGCuGcCGUCACcGcCGUCACCGCCg -3' miRNA: 3'- -GGUGcC-GCAGUGaCaGUAGUGGCGGg -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 209181 | 0.72 | 0.847858 |
Target: 5'- aCCACcGuCGUCACgGUCGUCACUGagguCCCu -3' miRNA: 3'- -GGUGcC-GCAGUGaCAGUAGUGGC----GGG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 312069 | 0.72 | 0.832623 |
Target: 5'- aCCAUGGCGcgUGCUGUgAgCGCCGCUUg -3' miRNA: 3'- -GGUGCCGCa-GUGACAgUaGUGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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