miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10293 5' -56.1 NC_002687.1 + 330317 0.67 0.970247
Target:  5'- gCACGGCGUCGCcuaUGUUccugGUCGaugaagaCGCCa -3'
miRNA:   3'- gGUGCCGCAGUG---ACAG----UAGUg------GCGGg -5'
10293 5' -56.1 NC_002687.1 + 215330 0.67 0.970247
Target:  5'- cCCGcCGGUGUCgaacgACUGgucCGUCuCCGCCg -3'
miRNA:   3'- -GGU-GCCGCAG-----UGACa--GUAGuGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 82562 0.67 0.970247
Target:  5'- cCCACGaugcCGUCacGCUGUCGUCGUCGUCg -3'
miRNA:   3'- -GGUGCc---GCAG--UGACAGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 167092 0.68 0.964445
Target:  5'- uCCACGGagggCGC-GUCAUCgACCGUCUu -3'
miRNA:   3'- -GGUGCCgca-GUGaCAGUAG-UGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 251953 0.68 0.96256
Target:  5'- uCCACGGUcaagcccacgcaccuGUCuCUGUCGU-GCUGCUCg -3'
miRNA:   3'- -GGUGCCG---------------CAGuGACAGUAgUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 96232 0.68 0.961266
Target:  5'- cCCGCGGCGUCAagg-CuUCACgCGCUUu -3'
miRNA:   3'- -GGUGCCGCAGUgacaGuAGUG-GCGGG- -5'
10293 5' -56.1 NC_002687.1 + 56549 0.68 0.961266
Target:  5'- uUACGGCGUCGCcacCA-CACaGCCCg -3'
miRNA:   3'- gGUGCCGCAGUGacaGUaGUGgCGGG- -5'
10293 5' -56.1 NC_002687.1 + 154799 0.68 0.961266
Target:  5'- aUCACGGCGaCACUcccGUCGUCGgCaguGCCUu -3'
miRNA:   3'- -GGUGCCGCaGUGA---CAGUAGUgG---CGGG- -5'
10293 5' -56.1 NC_002687.1 + 260181 0.68 0.961266
Target:  5'- cCCACaGCaUC-UUGUCggCGCUGCCCg -3'
miRNA:   3'- -GGUGcCGcAGuGACAGuaGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 18430 0.68 0.957894
Target:  5'- -aACGGUGUUGCUGUgGcUCGCUGUCg -3'
miRNA:   3'- ggUGCCGCAGUGACAgU-AGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 41974 0.68 0.954327
Target:  5'- aUCGC-GUGUCACgaacgGUUggCACCGUCCg -3'
miRNA:   3'- -GGUGcCGCAGUGa----CAGuaGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 33077 0.68 0.954327
Target:  5'- aCGCGGUgaugagacaGUCGgUGUCAUC-CCuCCCg -3'
miRNA:   3'- gGUGCCG---------CAGUgACAGUAGuGGcGGG- -5'
10293 5' -56.1 NC_002687.1 + 240052 0.68 0.954327
Target:  5'- -gGCGGCGUCuggaccguGCUgGUCGUaCAcCCGCCg -3'
miRNA:   3'- ggUGCCGCAG--------UGA-CAGUA-GU-GGCGGg -5'
10293 5' -56.1 NC_002687.1 + 57701 0.68 0.954327
Target:  5'- uCgGCGGCG-CACgga---CACCGCCCg -3'
miRNA:   3'- -GgUGCCGCaGUGacaguaGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 65204 0.68 0.954327
Target:  5'- aCAcCGGCGacggCACgg-CAUCauguGCCGCCCa -3'
miRNA:   3'- gGU-GCCGCa---GUGacaGUAG----UGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 167875 0.68 0.950561
Target:  5'- uCCGCGGCG-CAacgGaUCA-CACCGCgCCu -3'
miRNA:   3'- -GGUGCCGCaGUga-C-AGUaGUGGCG-GG- -5'
10293 5' -56.1 NC_002687.1 + 97982 0.68 0.950561
Target:  5'- aCACGGUGccggCAC-GUCAUCACUGUa- -3'
miRNA:   3'- gGUGCCGCa---GUGaCAGUAGUGGCGgg -5'
10293 5' -56.1 NC_002687.1 + 103139 0.68 0.950561
Target:  5'- uCUuCGcCGUCGCUGUCGcugUCGCCGUCg -3'
miRNA:   3'- -GGuGCcGCAGUGACAGU---AGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 244172 0.68 0.950561
Target:  5'- uUCACGGCaUCcUUGUCAUCGgCGCagCCa -3'
miRNA:   3'- -GGUGCCGcAGuGACAGUAGUgGCG--GG- -5'
10293 5' -56.1 NC_002687.1 + 90373 0.68 0.950561
Target:  5'- gCCAUGGCGUC---GUCA--ACCGaCCCg -3'
miRNA:   3'- -GGUGCCGCAGugaCAGUagUGGC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.