miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10293 5' -56.1 NC_002687.1 + 41119 0.66 0.981738
Target:  5'- --uCGGUGUCACcGUC-UCGCCGgUCu -3'
miRNA:   3'- gguGCCGCAGUGaCAGuAGUGGCgGG- -5'
10293 5' -56.1 NC_002687.1 + 61855 0.67 0.979761
Target:  5'- gCgACGGCGUCAag---AUUACCGUCCc -3'
miRNA:   3'- -GgUGCCGCAGUgacagUAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 84693 0.67 0.979761
Target:  5'- -uGCGGCGgacUCAgUGaUCGUCAUgGCCg -3'
miRNA:   3'- ggUGCCGC---AGUgAC-AGUAGUGgCGGg -5'
10293 5' -56.1 NC_002687.1 + 196243 0.67 0.97763
Target:  5'- aUCGCGuuucUCAUcgGUCGUUGCCGCCCg -3'
miRNA:   3'- -GGUGCcgc-AGUGa-CAGUAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 158803 0.67 0.97763
Target:  5'- gCACGGCGgcgacaACgacggaccGcCGUCGCCGCCg -3'
miRNA:   3'- gGUGCCGCag----UGa-------CaGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 106930 0.67 0.97763
Target:  5'- aCCACaaGGCGUCACacggGUCuuUCGaugaCGCCg -3'
miRNA:   3'- -GGUG--CCGCAGUGa---CAGu-AGUg---GCGGg -5'
10293 5' -56.1 NC_002687.1 + 160310 0.67 0.97763
Target:  5'- -gGCGGCG--GCUGcCuUgGCCGCCCc -3'
miRNA:   3'- ggUGCCGCagUGACaGuAgUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 316270 0.67 0.97763
Target:  5'- -gGCGGUGgugCAaUGUCG-CACCaGCCCu -3'
miRNA:   3'- ggUGCCGCa--GUgACAGUaGUGG-CGGG- -5'
10293 5' -56.1 NC_002687.1 + 208938 0.67 0.97763
Target:  5'- aCCGuCGuCGUCGCUGcugcuuccaUCGUCGCUGCUg -3'
miRNA:   3'- -GGU-GCcGCAGUGAC---------AGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 63400 0.67 0.975338
Target:  5'- cCCGuCGGCGUgCGagauccCAUaCGCCGCCCa -3'
miRNA:   3'- -GGU-GCCGCA-GUgaca--GUA-GUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 302108 0.67 0.975338
Target:  5'- gCCGgcGCGUCAagcgGU--UCACCGCCCg -3'
miRNA:   3'- -GGUgcCGCAGUga--CAguAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 202838 0.67 0.975338
Target:  5'- aCGCGGaugccgugcagaCGUUc--GUCAUCACCGCCa -3'
miRNA:   3'- gGUGCC------------GCAGugaCAGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 111319 0.67 0.975338
Target:  5'- gUACGGUGUCAa---CAUCGCgGCCa -3'
miRNA:   3'- gGUGCCGCAGUgacaGUAGUGgCGGg -5'
10293 5' -56.1 NC_002687.1 + 146789 0.67 0.975099
Target:  5'- -gGCGGCGUCcagaaucccgaccACggGaUCuuuaacuUCACCGCCCa -3'
miRNA:   3'- ggUGCCGCAG-------------UGa-C-AGu------AGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 35539 0.67 0.972879
Target:  5'- gCuCGGCGUaCAC-GUCAggCACCGCUUu -3'
miRNA:   3'- gGuGCCGCA-GUGaCAGUa-GUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 208612 0.67 0.972879
Target:  5'- aCCGuCGuCGUCACUgcugcuuccaucGUCGUCGCUGCUg -3'
miRNA:   3'- -GGU-GCcGCAGUGA------------CAGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 208759 0.67 0.972879
Target:  5'- aCCGuCGuCGUCACUgcugcuuccaucGUCGUCGCUGCUg -3'
miRNA:   3'- -GGU-GCcGCAGUGA------------CAGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 300529 0.67 0.972879
Target:  5'- -aAUGGCGcCAaaGUUAUCACCuGCCg -3'
miRNA:   3'- ggUGCCGCaGUgaCAGUAGUGG-CGGg -5'
10293 5' -56.1 NC_002687.1 + 25505 0.67 0.972879
Target:  5'- --uCGGUGUCACcGUC-UCACCGgUCu -3'
miRNA:   3'- gguGCCGCAGUGaCAGuAGUGGCgGG- -5'
10293 5' -56.1 NC_002687.1 + 239696 0.67 0.970247
Target:  5'- aUCACGGUcguGUCgaacgcguaGCUGUCGUCGuacUCGUCCu -3'
miRNA:   3'- -GGUGCCG---CAG---------UGACAGUAGU---GGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.