miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10293 5' -56.1 NC_002687.1 + 18587 0.69 0.933459
Target:  5'- -gGCGGCGggggaaGCUGUgGUCAUC-CCCg -3'
miRNA:   3'- ggUGCCGCag----UGACAgUAGUGGcGGG- -5'
10293 5' -56.1 NC_002687.1 + 307442 0.71 0.855222
Target:  5'- aUCGCuGcCGUCACcGcCGUCACCGCCg -3'
miRNA:   3'- -GGUGcC-GCAGUGaCaGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 71284 0.66 0.988225
Target:  5'- -gAUGGCGaaGCUuaCAUCACCGCUg -3'
miRNA:   3'- ggUGCCGCagUGAcaGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 155003 0.66 0.983566
Target:  5'- aCgACGGUGaCGCUGUUuUCACCaCCa -3'
miRNA:   3'- -GgUGCCGCaGUGACAGuAGUGGcGGg -5'
10293 5' -56.1 NC_002687.1 + 41974 0.68 0.954327
Target:  5'- aUCGC-GUGUCACgaacgGUUggCACCGUCCg -3'
miRNA:   3'- -GGUGcCGCAGUGa----CAGuaGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 312069 0.72 0.832623
Target:  5'- aCCAUGGCGcgUGCUGUgAgCGCCGCUUg -3'
miRNA:   3'- -GGUGCCGCa-GUGACAgUaGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 196243 0.67 0.97763
Target:  5'- aUCGCGuuucUCAUcgGUCGUUGCCGCCCg -3'
miRNA:   3'- -GGUGCcgc-AGUGa-CAGUAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 122442 0.74 0.747961
Target:  5'- -gACGGaGUCAgUGUCAcauucgcgCACCGCCCu -3'
miRNA:   3'- ggUGCCgCAGUgACAGUa-------GUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 204537 0.82 0.332947
Target:  5'- gCGCGGUGUUcgaugauGCguaGUCGUCGCCGCCCg -3'
miRNA:   3'- gGUGCCGCAG-------UGa--CAGUAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 154799 0.68 0.961266
Target:  5'- aUCACGGCGaCACUcccGUCGUCGgCaguGCCUu -3'
miRNA:   3'- -GGUGCCGCaGUGA---CAGUAGUgG---CGGG- -5'
10293 5' -56.1 NC_002687.1 + 318709 0.66 0.986653
Target:  5'- cCCACGGaaacaguUGUaCACUGUCG-CACaCGCUg -3'
miRNA:   3'- -GGUGCC-------GCA-GUGACAGUaGUG-GCGGg -5'
10293 5' -56.1 NC_002687.1 + 51526 0.7 0.907404
Target:  5'- gCCACGGCGcUCACUucGUCGcagagacaUUACUGCgCa -3'
miRNA:   3'- -GGUGCCGC-AGUGA--CAGU--------AGUGGCGgG- -5'
10293 5' -56.1 NC_002687.1 + 72967 0.7 0.901571
Target:  5'- gCC-CcGCGUUGCUGUCgccGUCACCGUCUc -3'
miRNA:   3'- -GGuGcCGCAGUGACAG---UAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 302108 0.67 0.975338
Target:  5'- gCCGgcGCGUCAagcgGU--UCACCGCCCg -3'
miRNA:   3'- -GGUgcCGCAGUga--CAguAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 315633 0.66 0.985252
Target:  5'- gCCGCaugaaGCuUgGCUGUCAcCACCGUCCc -3'
miRNA:   3'- -GGUGc----CGcAgUGACAGUaGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 61855 0.67 0.979761
Target:  5'- gCgACGGCGUCAag---AUUACCGUCCc -3'
miRNA:   3'- -GgUGCCGCAGUgacagUAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 84693 0.67 0.979761
Target:  5'- -uGCGGCGgacUCAgUGaUCGUCAUgGCCg -3'
miRNA:   3'- ggUGCCGC---AGUgAC-AGUAGUGgCGGg -5'
10293 5' -56.1 NC_002687.1 + 251953 0.68 0.96256
Target:  5'- uCCACGGUcaagcccacgcaccuGUCuCUGUCGU-GCUGCUCg -3'
miRNA:   3'- -GGUGCCG---------------CAGuGACAGUAgUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 239696 0.67 0.970247
Target:  5'- aUCACGGUcguGUCgaacgcguaGCUGUCGUCGuacUCGUCCu -3'
miRNA:   3'- -GGUGCCG---CAG---------UGACAGUAGU---GGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 330317 0.67 0.970247
Target:  5'- gCACGGCGUCGCcuaUGUUccugGUCGaugaagaCGCCa -3'
miRNA:   3'- gGUGCCGCAGUG---ACAG----UAGUg------GCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.