miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10293 5' -56.1 NC_002687.1 + 204537 0.82 0.332947
Target:  5'- gCGCGGUGUUcgaugauGCguaGUCGUCGCCGCCCg -3'
miRNA:   3'- gGUGCCGCAG-------UGa--CAGUAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 41974 0.68 0.954327
Target:  5'- aUCGC-GUGUCACgaacgGUUggCACCGUCCg -3'
miRNA:   3'- -GGUGcCGCAGUGa----CAGuaGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 56549 0.68 0.961266
Target:  5'- uUACGGCGUCGCcacCA-CACaGCCCg -3'
miRNA:   3'- gGUGCCGCAGUGacaGUaGUGgCGGG- -5'
10293 5' -56.1 NC_002687.1 + 71284 0.66 0.988225
Target:  5'- -gAUGGCGaaGCUuaCAUCACCGCUg -3'
miRNA:   3'- ggUGCCGCagUGAcaGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 72967 0.7 0.901571
Target:  5'- gCC-CcGCGUUGCUGUCgccGUCACCGUCUc -3'
miRNA:   3'- -GGuGcCGCAGUGACAG---UAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 49655 0.7 0.907404
Target:  5'- gCCACGGCGcUCACUucGUCGcagagacaUUACUGCgCa -3'
miRNA:   3'- -GGUGCCGC-AGUGA--CAGU--------AGUGGCGgG- -5'
10293 5' -56.1 NC_002687.1 + 51526 0.7 0.907404
Target:  5'- gCCACGGCGcUCACUucGUCGcagagacaUUACUGCgCa -3'
miRNA:   3'- -GGUGCCGC-AGUGA--CAGU--------AGUGGCGgG- -5'
10293 5' -56.1 NC_002687.1 + 295145 0.7 0.913031
Target:  5'- uCCAUGGCGUC-CUG-CAgcaCACgGCgCCg -3'
miRNA:   3'- -GGUGCCGCAGuGACaGUa--GUGgCG-GG- -5'
10293 5' -56.1 NC_002687.1 + 202987 0.69 0.933459
Target:  5'- aCCACGGUGacUCACgacGaCAUCACCGgCa -3'
miRNA:   3'- -GGUGCCGC--AGUGa--CaGUAGUGGCgGg -5'
10293 5' -56.1 NC_002687.1 + 65204 0.68 0.954327
Target:  5'- aCAcCGGCGacggCACgg-CAUCauguGCCGCCCa -3'
miRNA:   3'- gGU-GCCGCa---GUGacaGUAG----UGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 308789 0.68 0.946186
Target:  5'- uCCACgaucgguGGUGUCGaguccaUCAUCGCCGCCa -3'
miRNA:   3'- -GGUG-------CCGCAGUgac---AGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 18587 0.69 0.933459
Target:  5'- -gGCGGCGggggaaGCUGUgGUCAUC-CCCg -3'
miRNA:   3'- ggUGCCGCag----UGACAgUAGUGGcGGG- -5'
10293 5' -56.1 NC_002687.1 + 122442 0.74 0.747961
Target:  5'- -gACGGaGUCAgUGUCAcauucgcgCACCGCCCu -3'
miRNA:   3'- ggUGCCgCAGUgACAGUa-------GUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 27840 0.68 0.950561
Target:  5'- -aACGGUGUCAUaagugccaucGUCAUUACCGUCa -3'
miRNA:   3'- ggUGCCGCAGUGa---------CAGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 312069 0.72 0.832623
Target:  5'- aCCAUGGCGcgUGCUGUgAgCGCCGCUUg -3'
miRNA:   3'- -GGUGCCGCa-GUGACAgUaGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 145682 0.69 0.923662
Target:  5'- cCCcUGGCGgacugcugCGCcGUCGUCACCGCg- -3'
miRNA:   3'- -GGuGCCGCa-------GUGaCAGUAGUGGCGgg -5'
10293 5' -56.1 NC_002687.1 + 90373 0.68 0.950561
Target:  5'- gCCAUGGCGUC---GUCA--ACCGaCCCg -3'
miRNA:   3'- -GGUGCCGCAGugaCAGUagUGGC-GGG- -5'
10293 5' -56.1 NC_002687.1 + 154799 0.68 0.961266
Target:  5'- aUCACGGCGaCACUcccGUCGUCGgCaguGCCUu -3'
miRNA:   3'- -GGUGCCGCaGUGA---CAGUAGUgG---CGGG- -5'
10293 5' -56.1 NC_002687.1 + 307442 0.71 0.855222
Target:  5'- aUCGCuGcCGUCACcGcCGUCACCGCCg -3'
miRNA:   3'- -GGUGcC-GCAGUGaCaGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 50541 0.7 0.907404
Target:  5'- gCCACGGCGcUCACUucGUCGcagagacaUUACUGCgCa -3'
miRNA:   3'- -GGUGCCGC-AGUGA--CAGU--------AGUGGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.