miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10293 5' -56.1 NC_002687.1 + 25505 0.67 0.972879
Target:  5'- --uCGGUGUCACcGUC-UCACCGgUCu -3'
miRNA:   3'- gguGCCGCAGUGaCAGuAGUGGCgGG- -5'
10293 5' -56.1 NC_002687.1 + 41119 0.66 0.981738
Target:  5'- --uCGGUGUCACcGUC-UCGCCGgUCu -3'
miRNA:   3'- gguGCCGCAGUGaCAGuAGUGGCgGG- -5'
10293 5' -56.1 NC_002687.1 + 84693 0.67 0.979761
Target:  5'- -uGCGGCGgacUCAgUGaUCGUCAUgGCCg -3'
miRNA:   3'- ggUGCCGC---AGUgAC-AGUAGUGgCGGg -5'
10293 5' -56.1 NC_002687.1 + 61855 0.67 0.979761
Target:  5'- gCgACGGCGUCAag---AUUACCGUCCc -3'
miRNA:   3'- -GgUGCCGCAGUgacagUAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 208938 0.67 0.97763
Target:  5'- aCCGuCGuCGUCGCUGcugcuuccaUCGUCGCUGCUg -3'
miRNA:   3'- -GGU-GCcGCAGUGAC---------AGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 106930 0.67 0.97763
Target:  5'- aCCACaaGGCGUCACacggGUCuuUCGaugaCGCCg -3'
miRNA:   3'- -GGUG--CCGCAGUGa---CAGu-AGUg---GCGGg -5'
10293 5' -56.1 NC_002687.1 + 160310 0.67 0.97763
Target:  5'- -gGCGGCG--GCUGcCuUgGCCGCCCc -3'
miRNA:   3'- ggUGCCGCagUGACaGuAgUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 316270 0.67 0.97763
Target:  5'- -gGCGGUGgugCAaUGUCG-CACCaGCCCu -3'
miRNA:   3'- ggUGCCGCa--GUgACAGUaGUGG-CGGG- -5'
10293 5' -56.1 NC_002687.1 + 146789 0.67 0.975099
Target:  5'- -gGCGGCGUCcagaaucccgaccACggGaUCuuuaacuUCACCGCCCa -3'
miRNA:   3'- ggUGCCGCAG-------------UGa-C-AGu------AGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 210279 0.66 0.983566
Target:  5'- aCCACGGgcacCACUGcCAcCACUGCCa -3'
miRNA:   3'- -GGUGCCgca-GUGACaGUaGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 298646 0.66 0.985252
Target:  5'- aCGCGGUG-CACUGUUuugagaaUACCGCUUu -3'
miRNA:   3'- gGUGCCGCaGUGACAGua-----GUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 254642 0.66 0.985252
Target:  5'- uUC-CGGCGUCACg--CGUgGCUGCUg -3'
miRNA:   3'- -GGuGCCGCAGUGacaGUAgUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 68403 0.66 0.986803
Target:  5'- -gAUGGUGgCACccggUGcCGUCACCGUCCc -3'
miRNA:   3'- ggUGCCGCaGUG----ACaGUAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 174240 0.66 0.986803
Target:  5'- aCGCGGUGuUCACUGUUucgagaugguUCGuCUGCCg -3'
miRNA:   3'- gGUGCCGC-AGUGACAGu---------AGU-GGCGGg -5'
10293 5' -56.1 NC_002687.1 + 312266 0.66 0.986803
Target:  5'- aUC-CGuGCGUCugUGUCAcaCGCuCGUCCu -3'
miRNA:   3'- -GGuGC-CGCAGugACAGUa-GUG-GCGGG- -5'
10293 5' -56.1 NC_002687.1 + 194717 0.66 0.986803
Target:  5'- aUCAcCGGaagaGUC-CUGUagacuUCACCGCCUg -3'
miRNA:   3'- -GGU-GCCg---CAGuGACAgu---AGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 220308 0.66 0.986803
Target:  5'- aUCAcCGGaagaGUC-CUGUagacuUCACCGCCUg -3'
miRNA:   3'- -GGU-GCCg---CAGuGACAgu---AGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 315043 0.66 0.986803
Target:  5'- -gGCGGCGaCACUGgCAUCugCcuuuuucauaGCCUg -3'
miRNA:   3'- ggUGCCGCaGUGACaGUAGugG----------CGGG- -5'
10293 5' -56.1 NC_002687.1 + 247206 0.66 0.986653
Target:  5'- cCCACGGaaacaguUGUaCACUGUCG-CACaCGCUg -3'
miRNA:   3'- -GGUGCC-------GCA-GUGACAGUaGUG-GCGGg -5'
10293 5' -56.1 NC_002687.1 + 203413 0.66 0.985252
Target:  5'- gUCACaGCG-UAC-GUCGUCuCCGCCUg -3'
miRNA:   3'- -GGUGcCGCaGUGaCAGUAGuGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.