miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10293 5' -56.1 NC_002687.1 + 18430 0.68 0.957894
Target:  5'- -aACGGUGUUGCUGUgGcUCGCUGUCg -3'
miRNA:   3'- ggUGCCGCAGUGACAgU-AGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 18587 0.69 0.933459
Target:  5'- -gGCGGCGggggaaGCUGUgGUCAUC-CCCg -3'
miRNA:   3'- ggUGCCGCag----UGACAgUAGUGGcGGG- -5'
10293 5' -56.1 NC_002687.1 + 18697 1.14 0.003755
Target:  5'- gCCACGGCGUCACUGUCAUCACCGCCCg -3'
miRNA:   3'- -GGUGCCGCAGUGACAGUAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 25505 0.67 0.972879
Target:  5'- --uCGGUGUCACcGUC-UCACCGgUCu -3'
miRNA:   3'- gguGCCGCAGUGaCAGuAGUGGCgGG- -5'
10293 5' -56.1 NC_002687.1 + 27580 0.73 0.800293
Target:  5'- aCCuCGGCGUCuCUGaUCGacucgCGCCGCUCa -3'
miRNA:   3'- -GGuGCCGCAGuGAC-AGUa----GUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 27840 0.68 0.950561
Target:  5'- -aACGGUGUCAUaagugccaucGUCAUUACCGUCa -3'
miRNA:   3'- ggUGCCGCAGUGa---------CAGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 32349 0.69 0.928665
Target:  5'- aUCACGGUGUCGCUG-CcgUACCGa-- -3'
miRNA:   3'- -GGUGCCGCAGUGACaGuaGUGGCggg -5'
10293 5' -56.1 NC_002687.1 + 33077 0.68 0.954327
Target:  5'- aCGCGGUgaugagacaGUCGgUGUCAUC-CCuCCCg -3'
miRNA:   3'- gGUGCCG---------CAGUgACAGUAGuGGcGGG- -5'
10293 5' -56.1 NC_002687.1 + 35539 0.67 0.972879
Target:  5'- gCuCGGCGUaCAC-GUCAggCACCGCUUu -3'
miRNA:   3'- gGuGCCGCA-GUGaCAGUa-GUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 41119 0.66 0.981738
Target:  5'- --uCGGUGUCACcGUC-UCGCCGgUCu -3'
miRNA:   3'- gguGCCGCAGUGaCAGuAGUGGCgGG- -5'
10293 5' -56.1 NC_002687.1 + 41974 0.68 0.954327
Target:  5'- aUCGC-GUGUCACgaacgGUUggCACCGUCCg -3'
miRNA:   3'- -GGUGcCGCAGUGa----CAGuaGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 49655 0.7 0.907404
Target:  5'- gCCACGGCGcUCACUucGUCGcagagacaUUACUGCgCa -3'
miRNA:   3'- -GGUGCCGC-AGUGA--CAGU--------AGUGGCGgG- -5'
10293 5' -56.1 NC_002687.1 + 50541 0.7 0.907404
Target:  5'- gCCACGGCGcUCACUucGUCGcagagacaUUACUGCgCa -3'
miRNA:   3'- -GGUGCCGC-AGUGA--CAGU--------AGUGGCGgG- -5'
10293 5' -56.1 NC_002687.1 + 51526 0.7 0.907404
Target:  5'- gCCACGGCGcUCACUucGUCGcagagacaUUACUGCgCa -3'
miRNA:   3'- -GGUGCCGC-AGUGA--CAGU--------AGUGGCGgG- -5'
10293 5' -56.1 NC_002687.1 + 56549 0.68 0.961266
Target:  5'- uUACGGCGUCGCcacCA-CACaGCCCg -3'
miRNA:   3'- gGUGCCGCAGUGacaGUaGUGgCGGG- -5'
10293 5' -56.1 NC_002687.1 + 57701 0.68 0.954327
Target:  5'- uCgGCGGCG-CACgga---CACCGCCCg -3'
miRNA:   3'- -GgUGCCGCaGUGacaguaGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 61855 0.67 0.979761
Target:  5'- gCgACGGCGUCAag---AUUACCGUCCc -3'
miRNA:   3'- -GgUGCCGCAGUgacagUAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 63400 0.67 0.975338
Target:  5'- cCCGuCGGCGUgCGagauccCAUaCGCCGCCCa -3'
miRNA:   3'- -GGU-GCCGCA-GUgaca--GUA-GUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 65204 0.68 0.954327
Target:  5'- aCAcCGGCGacggCACgg-CAUCauguGCCGCCCa -3'
miRNA:   3'- gGU-GCCGCa---GUGacaGUAG----UGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 68403 0.66 0.986803
Target:  5'- -gAUGGUGgCACccggUGcCGUCACCGUCCc -3'
miRNA:   3'- ggUGCCGCaGUG----ACaGUAGUGGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.