miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10293 5' -56.1 NC_002687.1 + 71284 0.66 0.988225
Target:  5'- -gAUGGCGaaGCUuaCAUCACCGCUg -3'
miRNA:   3'- ggUGCCGCagUGAcaGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 72967 0.7 0.901571
Target:  5'- gCC-CcGCGUUGCUGUCgccGUCACCGUCUc -3'
miRNA:   3'- -GGuGcCGCAGUGACAG---UAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 82562 0.67 0.970247
Target:  5'- cCCACGaugcCGUCacGCUGUCGUCGUCGUCg -3'
miRNA:   3'- -GGUGCc---GCAG--UGACAGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 84693 0.67 0.979761
Target:  5'- -uGCGGCGgacUCAgUGaUCGUCAUgGCCg -3'
miRNA:   3'- ggUGCCGC---AGUgAC-AGUAGUGgCGGg -5'
10293 5' -56.1 NC_002687.1 + 90373 0.68 0.950561
Target:  5'- gCCAUGGCGUC---GUCA--ACCGaCCCg -3'
miRNA:   3'- -GGUGCCGCAGugaCAGUagUGGC-GGG- -5'
10293 5' -56.1 NC_002687.1 + 96232 0.68 0.961266
Target:  5'- cCCGCGGCGUCAagg-CuUCACgCGCUUu -3'
miRNA:   3'- -GGUGCCGCAGUgacaGuAGUG-GCGGG- -5'
10293 5' -56.1 NC_002687.1 + 96947 0.66 0.985252
Target:  5'- -aACGGCGUCGgucgaUGUCGagGCCuGCaCCg -3'
miRNA:   3'- ggUGCCGCAGUg----ACAGUagUGG-CG-GG- -5'
10293 5' -56.1 NC_002687.1 + 97982 0.68 0.950561
Target:  5'- aCACGGUGccggCAC-GUCAUCACUGUa- -3'
miRNA:   3'- gGUGCCGCa---GUGaCAGUAGUGGCGgg -5'
10293 5' -56.1 NC_002687.1 + 103080 0.7 0.918451
Target:  5'- gCCGuCGcUGUCGCUGUCAcuUCACUGUCUu -3'
miRNA:   3'- -GGU-GCcGCAGUGACAGU--AGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 103139 0.68 0.950561
Target:  5'- uCUuCGcCGUCGCUGUCGcugUCGCCGUCg -3'
miRNA:   3'- -GGuGCcGCAGUGACAGU---AGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 105687 0.72 0.808592
Target:  5'- aUCGCaGGCGUCuCUgcaaccagucGUCGUCcauuGCCGCCCa -3'
miRNA:   3'- -GGUG-CCGCAGuGA----------CAGUAG----UGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 106930 0.67 0.97763
Target:  5'- aCCACaaGGCGUCACacggGUCuuUCGaugaCGCCg -3'
miRNA:   3'- -GGUG--CCGCAGUGa---CAGu-AGUg---GCGGg -5'
10293 5' -56.1 NC_002687.1 + 111319 0.67 0.975338
Target:  5'- gUACGGUGUCAa---CAUCGCgGCCa -3'
miRNA:   3'- gGUGCCGCAGUgacaGUAGUGgCGGg -5'
10293 5' -56.1 NC_002687.1 + 120062 0.73 0.791861
Target:  5'- uCgACGGCGUUGCUGUCGaCACCGg-- -3'
miRNA:   3'- -GgUGCCGCAGUGACAGUaGUGGCggg -5'
10293 5' -56.1 NC_002687.1 + 122442 0.74 0.747961
Target:  5'- -gACGGaGUCAgUGUCAcauucgcgCACCGCCCu -3'
miRNA:   3'- ggUGCCgCAGUgACAGUa-------GUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 126576 0.66 0.985252
Target:  5'- aCCACGGCGgaaGCgucuuugGUUggCACuCGUCCc -3'
miRNA:   3'- -GGUGCCGCag-UGa------CAGuaGUG-GCGGG- -5'
10293 5' -56.1 NC_002687.1 + 145682 0.69 0.923662
Target:  5'- cCCcUGGCGgacugcugCGCcGUCGUCACCGCg- -3'
miRNA:   3'- -GGuGCCGCa-------GUGaCAGUAGUGGCGgg -5'
10293 5' -56.1 NC_002687.1 + 146789 0.67 0.975099
Target:  5'- -gGCGGCGUCcagaaucccgaccACggGaUCuuuaacuUCACCGCCCa -3'
miRNA:   3'- ggUGCCGCAG-------------UGa-C-AGu------AGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 154799 0.68 0.961266
Target:  5'- aUCACGGCGaCACUcccGUCGUCGgCaguGCCUu -3'
miRNA:   3'- -GGUGCCGCaGUGA---CAGUAGUgG---CGGG- -5'
10293 5' -56.1 NC_002687.1 + 155003 0.66 0.983566
Target:  5'- aCgACGGUGaCGCUGUUuUCACCaCCa -3'
miRNA:   3'- -GgUGCCGCaGUGACAGuAGUGGcGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.