Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10293 | 5' | -56.1 | NC_002687.1 | + | 145682 | 0.69 | 0.923662 |
Target: 5'- cCCcUGGCGgacugcugCGCcGUCGUCACCGCg- -3' miRNA: 3'- -GGuGCCGCa-------GUGaCAGUAGUGGCGgg -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 32349 | 0.69 | 0.928665 |
Target: 5'- aUCACGGUGUCGCUG-CcgUACCGa-- -3' miRNA: 3'- -GGUGCCGCAGUGACaGuaGUGGCggg -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 221828 | 0.69 | 0.933459 |
Target: 5'- -aAauGUGUCGCguuucucaucgGUCGUUGCCGCCCg -3' miRNA: 3'- ggUgcCGCAGUGa----------CAGUAGUGGCGGG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 202987 | 0.69 | 0.933459 |
Target: 5'- aCCACGGUGacUCACgacGaCAUCACCGgCa -3' miRNA: 3'- -GGUGCCGC--AGUGa--CaGUAGUGGCgGg -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 18587 | 0.69 | 0.933459 |
Target: 5'- -gGCGGCGggggaaGCUGUgGUCAUC-CCCg -3' miRNA: 3'- ggUGCCGCag----UGACAgUAGUGGcGGG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 299652 | 0.69 | 0.933459 |
Target: 5'- gCGCGGCGguaaUCAUguUGUCGacccUCGUCGCCCg -3' miRNA: 3'- gGUGCCGC----AGUG--ACAGU----AGUGGCGGG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 159169 | 0.69 | 0.933459 |
Target: 5'- gCgACGGCgGUC-CgucGUUGUCGCCGCCg -3' miRNA: 3'- -GgUGCCG-CAGuGa--CAGUAGUGGCGGg -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 308789 | 0.68 | 0.946186 |
Target: 5'- uCCACgaucgguGGUGUCGaguccaUCAUCGCCGCCa -3' miRNA: 3'- -GGUG-------CCGCAGUgac---AGUAGUGGCGGg -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 27840 | 0.68 | 0.950561 |
Target: 5'- -aACGGUGUCAUaagugccaucGUCAUUACCGUCa -3' miRNA: 3'- ggUGCCGCAGUGa---------CAGUAGUGGCGGg -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 90373 | 0.68 | 0.950561 |
Target: 5'- gCCAUGGCGUC---GUCA--ACCGaCCCg -3' miRNA: 3'- -GGUGCCGCAGugaCAGUagUGGC-GGG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 244172 | 0.68 | 0.950561 |
Target: 5'- uUCACGGCaUCcUUGUCAUCGgCGCagCCa -3' miRNA: 3'- -GGUGCCGcAGuGACAGUAGUgGCG--GG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 103139 | 0.68 | 0.950561 |
Target: 5'- uCUuCGcCGUCGCUGUCGcugUCGCCGUCg -3' miRNA: 3'- -GGuGCcGCAGUGACAGU---AGUGGCGGg -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 97982 | 0.68 | 0.950561 |
Target: 5'- aCACGGUGccggCAC-GUCAUCACUGUa- -3' miRNA: 3'- gGUGCCGCa---GUGaCAGUAGUGGCGgg -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 167875 | 0.68 | 0.950561 |
Target: 5'- uCCGCGGCG-CAacgGaUCA-CACCGCgCCu -3' miRNA: 3'- -GGUGCCGCaGUga-C-AGUaGUGGCG-GG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 57701 | 0.68 | 0.954327 |
Target: 5'- uCgGCGGCG-CACgga---CACCGCCCg -3' miRNA: 3'- -GgUGCCGCaGUGacaguaGUGGCGGG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 240052 | 0.68 | 0.954327 |
Target: 5'- -gGCGGCGUCuggaccguGCUgGUCGUaCAcCCGCCg -3' miRNA: 3'- ggUGCCGCAG--------UGA-CAGUA-GU-GGCGGg -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 33077 | 0.68 | 0.954327 |
Target: 5'- aCGCGGUgaugagacaGUCGgUGUCAUC-CCuCCCg -3' miRNA: 3'- gGUGCCG---------CAGUgACAGUAGuGGcGGG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 41974 | 0.68 | 0.954327 |
Target: 5'- aUCGC-GUGUCACgaacgGUUggCACCGUCCg -3' miRNA: 3'- -GGUGcCGCAGUGa----CAGuaGUGGCGGG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 65204 | 0.68 | 0.954327 |
Target: 5'- aCAcCGGCGacggCACgg-CAUCauguGCCGCCCa -3' miRNA: 3'- gGU-GCCGCa---GUGacaGUAG----UGGCGGG- -5' |
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10293 | 5' | -56.1 | NC_002687.1 | + | 18430 | 0.68 | 0.957894 |
Target: 5'- -aACGGUGUUGCUGUgGcUCGCUGUCg -3' miRNA: 3'- ggUGCCGCAGUGACAgU-AGUGGCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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