miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10293 5' -56.1 NC_002687.1 + 18697 1.14 0.003755
Target:  5'- gCCACGGCGUCACUGUCAUCACCGCCCg -3'
miRNA:   3'- -GGUGCCGCAGUGACAGUAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 204537 0.82 0.332947
Target:  5'- gCGCGGUGUUcgaugauGCguaGUCGUCGCCGCCCg -3'
miRNA:   3'- gGUGCCGCAG-------UGa--CAGUAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 328466 0.79 0.485912
Target:  5'- uCCAUGGCGaaGCcGUCGUCGCCGCUUu -3'
miRNA:   3'- -GGUGCCGCagUGaCAGUAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 122442 0.74 0.747961
Target:  5'- -gACGGaGUCAgUGUCAcauucgcgCACCGCCCu -3'
miRNA:   3'- ggUGCCgCAGUgACAGUa-------GUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 290610 0.73 0.783304
Target:  5'- cCCugGGCGUUAgccuCUGUUucaAUCACCugcGCCCc -3'
miRNA:   3'- -GGugCCGCAGU----GACAG---UAGUGG---CGGG- -5'
10293 5' -56.1 NC_002687.1 + 120062 0.73 0.791861
Target:  5'- uCgACGGCGUUGCUGUCGaCACCGg-- -3'
miRNA:   3'- -GgUGCCGCAGUGACAGUaGUGGCggg -5'
10293 5' -56.1 NC_002687.1 + 27580 0.73 0.800293
Target:  5'- aCCuCGGCGUCuCUGaUCGacucgCGCCGCUCa -3'
miRNA:   3'- -GGuGCCGCAGuGAC-AGUa----GUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 105687 0.72 0.808592
Target:  5'- aUCGCaGGCGUCuCUgcaaccagucGUCGUCcauuGCCGCCCa -3'
miRNA:   3'- -GGUG-CCGCAGuGA----------CAGUAG----UGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 215668 0.72 0.824764
Target:  5'- gUCGUGGcCGUCACUGUCGccgUCGCCgaGCCUa -3'
miRNA:   3'- -GGUGCC-GCAGUGACAGU---AGUGG--CGGG- -5'
10293 5' -56.1 NC_002687.1 + 312069 0.72 0.832623
Target:  5'- aCCAUGGCGcgUGCUGUgAgCGCCGCUUg -3'
miRNA:   3'- -GGUGCCGCa-GUGACAgUaGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 209181 0.72 0.847858
Target:  5'- aCCACcGuCGUCACgGUCGUCACUGagguCCCu -3'
miRNA:   3'- -GGUGcC-GCAGUGaCAGUAGUGGC----GGG- -5'
10293 5' -56.1 NC_002687.1 + 307442 0.71 0.855222
Target:  5'- aUCGCuGcCGUCACcGcCGUCACCGCCg -3'
miRNA:   3'- -GGUGcC-GCAGUGaCaGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 200477 0.71 0.869415
Target:  5'- -aACGGCG-CGCggccGUCGUCGCCgGCaCCa -3'
miRNA:   3'- ggUGCCGCaGUGa---CAGUAGUGG-CG-GG- -5'
10293 5' -56.1 NC_002687.1 + 72967 0.7 0.901571
Target:  5'- gCC-CcGCGUUGCUGUCgccGUCACCGUCUc -3'
miRNA:   3'- -GGuGcCGCAGUGACAG---UAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 50541 0.7 0.907404
Target:  5'- gCCACGGCGcUCACUucGUCGcagagacaUUACUGCgCa -3'
miRNA:   3'- -GGUGCCGC-AGUGA--CAGU--------AGUGGCGgG- -5'
10293 5' -56.1 NC_002687.1 + 51526 0.7 0.907404
Target:  5'- gCCACGGCGcUCACUucGUCGcagagacaUUACUGCgCa -3'
miRNA:   3'- -GGUGCCGC-AGUGA--CAGU--------AGUGGCGgG- -5'
10293 5' -56.1 NC_002687.1 + 49655 0.7 0.907404
Target:  5'- gCCACGGCGcUCACUucGUCGcagagacaUUACUGCgCa -3'
miRNA:   3'- -GGUGCCGC-AGUGA--CAGU--------AGUGGCGgG- -5'
10293 5' -56.1 NC_002687.1 + 295145 0.7 0.913031
Target:  5'- uCCAUGGCGUC-CUG-CAgcaCACgGCgCCg -3'
miRNA:   3'- -GGUGCCGCAGuGACaGUa--GUGgCG-GG- -5'
10293 5' -56.1 NC_002687.1 + 307870 0.7 0.918451
Target:  5'- aCGCGGCGUgACUGggacCACCagGCCUg -3'
miRNA:   3'- gGUGCCGCAgUGACaguaGUGG--CGGG- -5'
10293 5' -56.1 NC_002687.1 + 103080 0.7 0.918451
Target:  5'- gCCGuCGcUGUCGCUGUCAcuUCACUGUCUu -3'
miRNA:   3'- -GGU-GCcGCAGUGACAGU--AGUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.