miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10293 5' -56.1 NC_002687.1 + 330317 0.67 0.970247
Target:  5'- gCACGGCGUCGCcuaUGUUccugGUCGaugaagaCGCCa -3'
miRNA:   3'- gGUGCCGCAGUG---ACAG----UAGUg------GCGGg -5'
10293 5' -56.1 NC_002687.1 + 328466 0.79 0.485912
Target:  5'- uCCAUGGCGaaGCcGUCGUCGCCGCUUu -3'
miRNA:   3'- -GGUGCCGCagUGaCAGUAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 318709 0.66 0.986653
Target:  5'- cCCACGGaaacaguUGUaCACUGUCG-CACaCGCUg -3'
miRNA:   3'- -GGUGCC-------GCA-GUGACAGUaGUG-GCGGg -5'
10293 5' -56.1 NC_002687.1 + 316270 0.67 0.97763
Target:  5'- -gGCGGUGgugCAaUGUCG-CACCaGCCCu -3'
miRNA:   3'- ggUGCCGCa--GUgACAGUaGUGG-CGGG- -5'
10293 5' -56.1 NC_002687.1 + 315633 0.66 0.985252
Target:  5'- gCCGCaugaaGCuUgGCUGUCAcCACCGUCCc -3'
miRNA:   3'- -GGUGc----CGcAgUGACAGUaGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 315043 0.66 0.986803
Target:  5'- -gGCGGCGaCACUGgCAUCugCcuuuuucauaGCCUg -3'
miRNA:   3'- ggUGCCGCaGUGACaGUAGugG----------CGGG- -5'
10293 5' -56.1 NC_002687.1 + 312266 0.66 0.986803
Target:  5'- aUC-CGuGCGUCugUGUCAcaCGCuCGUCCu -3'
miRNA:   3'- -GGuGC-CGCAGugACAGUa-GUG-GCGGG- -5'
10293 5' -56.1 NC_002687.1 + 312069 0.72 0.832623
Target:  5'- aCCAUGGCGcgUGCUGUgAgCGCCGCUUg -3'
miRNA:   3'- -GGUGCCGCa-GUGACAgUaGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 308789 0.68 0.946186
Target:  5'- uCCACgaucgguGGUGUCGaguccaUCAUCGCCGCCa -3'
miRNA:   3'- -GGUG-------CCGCAGUgac---AGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 307870 0.7 0.918451
Target:  5'- aCGCGGCGUgACUGggacCACCagGCCUg -3'
miRNA:   3'- gGUGCCGCAgUGACaguaGUGG--CGGG- -5'
10293 5' -56.1 NC_002687.1 + 307442 0.71 0.855222
Target:  5'- aUCGCuGcCGUCACcGcCGUCACCGCCg -3'
miRNA:   3'- -GGUGcC-GCAGUGaCaGUAGUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 302108 0.67 0.975338
Target:  5'- gCCGgcGCGUCAagcgGU--UCACCGCCCg -3'
miRNA:   3'- -GGUgcCGCAGUga--CAguAGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 300529 0.67 0.972879
Target:  5'- -aAUGGCGcCAaaGUUAUCACCuGCCg -3'
miRNA:   3'- ggUGCCGCaGUgaCAGUAGUGG-CGGg -5'
10293 5' -56.1 NC_002687.1 + 299652 0.69 0.933459
Target:  5'- gCGCGGCGguaaUCAUguUGUCGacccUCGUCGCCCg -3'
miRNA:   3'- gGUGCCGC----AGUG--ACAGU----AGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 298646 0.66 0.985252
Target:  5'- aCGCGGUG-CACUGUUuugagaaUACCGCUUu -3'
miRNA:   3'- gGUGCCGCaGUGACAGua-----GUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 295145 0.7 0.913031
Target:  5'- uCCAUGGCGUC-CUG-CAgcaCACgGCgCCg -3'
miRNA:   3'- -GGUGCCGCAGuGACaGUa--GUGgCG-GG- -5'
10293 5' -56.1 NC_002687.1 + 290610 0.73 0.783304
Target:  5'- cCCugGGCGUUAgccuCUGUUucaAUCACCugcGCCCc -3'
miRNA:   3'- -GGugCCGCAGU----GACAG---UAGUGG---CGGG- -5'
10293 5' -56.1 NC_002687.1 + 260181 0.68 0.961266
Target:  5'- cCCACaGCaUC-UUGUCggCGCUGCCCg -3'
miRNA:   3'- -GGUGcCGcAGuGACAGuaGUGGCGGG- -5'
10293 5' -56.1 NC_002687.1 + 254642 0.66 0.985252
Target:  5'- uUC-CGGCGUCACg--CGUgGCUGCUg -3'
miRNA:   3'- -GGuGCCGCAGUGacaGUAgUGGCGGg -5'
10293 5' -56.1 NC_002687.1 + 251953 0.68 0.96256
Target:  5'- uCCACGGUcaagcccacgcaccuGUCuCUGUCGU-GCUGCUCg -3'
miRNA:   3'- -GGUGCCG---------------CAGuGACAGUAgUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.