miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10294 5' -47 NC_002687.1 + 113628 0.66 1
Target:  5'- -----cGGGcacGCGUCCAAGGCGuuugcAAUCu -3'
miRNA:   3'- aaaauuCCC---UGCAGGUUCUGC-----UUAGc -5'
10294 5' -47 NC_002687.1 + 173604 0.66 1
Target:  5'- ----cGGGGGCGgaggCgGAGGCGGAggCGg -3'
miRNA:   3'- aaaauUCCCUGCa---GgUUCUGCUUa-GC- -5'
10294 5' -47 NC_002687.1 + 130833 0.66 1
Target:  5'- -----uGGGACGUCaAGGACGAc--- -3'
miRNA:   3'- aaaauuCCCUGCAGgUUCUGCUuagc -5'
10294 5' -47 NC_002687.1 + 34317 0.66 0.999999
Target:  5'- aUUUGcGGGAUGUCCAAGA-GAc--- -3'
miRNA:   3'- aAAAUuCCCUGCAGGUUCUgCUuagc -5'
10294 5' -47 NC_002687.1 + 225848 0.66 0.999999
Target:  5'- ---gGGGGGugGUgugggcggCCGGGACGAGgagaCGg -3'
miRNA:   3'- aaaaUUCCCugCA--------GGUUCUGCUUa---GC- -5'
10294 5' -47 NC_002687.1 + 123675 0.66 0.999999
Target:  5'- ---aGGGGGACauuagcUCCAGGGCGGAa-- -3'
miRNA:   3'- aaaaUUCCCUGc-----AGGUUCUGCUUagc -5'
10294 5' -47 NC_002687.1 + 239305 0.66 0.999999
Target:  5'- ---gAAGGaGCGUCUcgAGGACGAGUaCGa -3'
miRNA:   3'- aaaaUUCCcUGCAGG--UUCUGCUUA-GC- -5'
10294 5' -47 NC_002687.1 + 226034 0.66 0.999999
Target:  5'- ---gGGGGGugGUgugggcggCCGGGACGAGgagaCGg -3'
miRNA:   3'- aaaaUUCCCugCA--------GGUUCUGCUUa---GC- -5'
10294 5' -47 NC_002687.1 + 226406 0.66 0.999999
Target:  5'- ---gGGGGGugGUgugggcggCCGGGACGAGgagaCGg -3'
miRNA:   3'- aaaaUUCCCugCA--------GGUUCUGCUUa---GC- -5'
10294 5' -47 NC_002687.1 + 279101 0.66 0.999999
Target:  5'- ----cGGGGGUGUgCCAAGAugUGAAUCGg -3'
miRNA:   3'- aaaauUCCCUGCA-GGUUCU--GCUUAGC- -5'
10294 5' -47 NC_002687.1 + 79134 0.66 0.999999
Target:  5'- -----uGGGAC-UCCuuuGAUGAAUCGg -3'
miRNA:   3'- aaaauuCCCUGcAGGuu-CUGCUUAGC- -5'
10294 5' -47 NC_002687.1 + 299267 0.67 0.999998
Target:  5'- ------aGGACGUCCAgcggcGGGCGAcgaggGUCGa -3'
miRNA:   3'- aaaauucCCUGCAGGU-----UCUGCU-----UAGC- -5'
10294 5' -47 NC_002687.1 + 91590 0.67 0.999994
Target:  5'- --gUAAGGGACuucuuuccguuuGUCCAcgcuGACGAGUUu -3'
miRNA:   3'- aaaAUUCCCUG------------CAGGUu---CUGCUUAGc -5'
10294 5' -47 NC_002687.1 + 59886 0.67 0.999994
Target:  5'- ---aGAGGGAuCGUCgCAGGAUGucgCGg -3'
miRNA:   3'- aaaaUUCCCU-GCAG-GUUCUGCuuaGC- -5'
10294 5' -47 NC_002687.1 + 235107 0.67 0.999994
Target:  5'- ----cGGGGcCGUCCGGGAUG-AUCc -3'
miRNA:   3'- aaaauUCCCuGCAGGUUCUGCuUAGc -5'
10294 5' -47 NC_002687.1 + 206191 0.68 0.999988
Target:  5'- -----cGGuGACGUCCAAGcuccauuuuacGCGGAUCu -3'
miRNA:   3'- aaaauuCC-CUGCAGGUUC-----------UGCUUAGc -5'
10294 5' -47 NC_002687.1 + 309758 0.68 0.99996
Target:  5'- --aUGAGGGAUGga-GGGGCGAGUUa -3'
miRNA:   3'- aaaAUUCCCUGCaggUUCUGCUUAGc -5'
10294 5' -47 NC_002687.1 + 151682 0.69 0.999909
Target:  5'- ---gGAGuGGACGUCCAucGGCGAGg-- -3'
miRNA:   3'- aaaaUUC-CCUGCAGGUu-CUGCUUagc -5'
10294 5' -47 NC_002687.1 + 301369 0.7 0.999753
Target:  5'- ---cGGGGGACG-CCAAGACc-AUCGc -3'
miRNA:   3'- aaaaUUCCCUGCaGGUUCUGcuUAGC- -5'
10294 5' -47 NC_002687.1 + 88016 0.7 0.999689
Target:  5'- ---cAAGGcGACGgCCAAGACGAAg-- -3'
miRNA:   3'- aaaaUUCC-CUGCaGGUUCUGCUUagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.