Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10294 | 5' | -47 | NC_002687.1 | + | 130833 | 0.66 | 1 |
Target: 5'- -----uGGGACGUCaAGGACGAc--- -3' miRNA: 3'- aaaauuCCCUGCAGgUUCUGCUuagc -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 113628 | 0.66 | 1 |
Target: 5'- -----cGGGcacGCGUCCAAGGCGuuugcAAUCu -3' miRNA: 3'- aaaauuCCC---UGCAGGUUCUGC-----UUAGc -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 173604 | 0.66 | 1 |
Target: 5'- ----cGGGGGCGgaggCgGAGGCGGAggCGg -3' miRNA: 3'- aaaauUCCCUGCa---GgUUCUGCUUa-GC- -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 123675 | 0.66 | 0.999999 |
Target: 5'- ---aGGGGGACauuagcUCCAGGGCGGAa-- -3' miRNA: 3'- aaaaUUCCCUGc-----AGGUUCUGCUUagc -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 239305 | 0.66 | 0.999999 |
Target: 5'- ---gAAGGaGCGUCUcgAGGACGAGUaCGa -3' miRNA: 3'- aaaaUUCCcUGCAGG--UUCUGCUUA-GC- -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 34317 | 0.66 | 0.999999 |
Target: 5'- aUUUGcGGGAUGUCCAAGA-GAc--- -3' miRNA: 3'- aAAAUuCCCUGCAGGUUCUgCUuagc -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 79134 | 0.66 | 0.999999 |
Target: 5'- -----uGGGAC-UCCuuuGAUGAAUCGg -3' miRNA: 3'- aaaauuCCCUGcAGGuu-CUGCUUAGC- -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 279101 | 0.66 | 0.999999 |
Target: 5'- ----cGGGGGUGUgCCAAGAugUGAAUCGg -3' miRNA: 3'- aaaauUCCCUGCA-GGUUCU--GCUUAGC- -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 226406 | 0.66 | 0.999999 |
Target: 5'- ---gGGGGGugGUgugggcggCCGGGACGAGgagaCGg -3' miRNA: 3'- aaaaUUCCCugCA--------GGUUCUGCUUa---GC- -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 226034 | 0.66 | 0.999999 |
Target: 5'- ---gGGGGGugGUgugggcggCCGGGACGAGgagaCGg -3' miRNA: 3'- aaaaUUCCCugCA--------GGUUCUGCUUa---GC- -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 225848 | 0.66 | 0.999999 |
Target: 5'- ---gGGGGGugGUgugggcggCCGGGACGAGgagaCGg -3' miRNA: 3'- aaaaUUCCCugCA--------GGUUCUGCUUa---GC- -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 299267 | 0.67 | 0.999998 |
Target: 5'- ------aGGACGUCCAgcggcGGGCGAcgaggGUCGa -3' miRNA: 3'- aaaauucCCUGCAGGU-----UCUGCU-----UAGC- -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 91590 | 0.67 | 0.999994 |
Target: 5'- --gUAAGGGACuucuuuccguuuGUCCAcgcuGACGAGUUu -3' miRNA: 3'- aaaAUUCCCUG------------CAGGUu---CUGCUUAGc -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 235107 | 0.67 | 0.999994 |
Target: 5'- ----cGGGGcCGUCCGGGAUG-AUCc -3' miRNA: 3'- aaaauUCCCuGCAGGUUCUGCuUAGc -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 59886 | 0.67 | 0.999994 |
Target: 5'- ---aGAGGGAuCGUCgCAGGAUGucgCGg -3' miRNA: 3'- aaaaUUCCCU-GCAG-GUUCUGCuuaGC- -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 206191 | 0.68 | 0.999988 |
Target: 5'- -----cGGuGACGUCCAAGcuccauuuuacGCGGAUCu -3' miRNA: 3'- aaaauuCC-CUGCAGGUUC-----------UGCUUAGc -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 309758 | 0.68 | 0.99996 |
Target: 5'- --aUGAGGGAUGga-GGGGCGAGUUa -3' miRNA: 3'- aaaAUUCCCUGCaggUUCUGCUUAGc -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 151682 | 0.69 | 0.999909 |
Target: 5'- ---gGAGuGGACGUCCAucGGCGAGg-- -3' miRNA: 3'- aaaaUUC-CCUGCAGGUu-CUGCUUagc -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 301369 | 0.7 | 0.999753 |
Target: 5'- ---cGGGGGACG-CCAAGACc-AUCGc -3' miRNA: 3'- aaaaUUCCCUGCaGGUUCUGcuUAGC- -5' |
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10294 | 5' | -47 | NC_002687.1 | + | 88016 | 0.7 | 0.999689 |
Target: 5'- ---cAAGGcGACGgCCAAGACGAAg-- -3' miRNA: 3'- aaaaUUCC-CUGCaGGUUCUGCUUagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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