Results 41 - 60 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10295 | 3' | -46 | NC_002687.1 | + | 328316 | 0.69 | 0.999991 |
Target: 5'- --aUCCAGAaa-CUGaUCAUGCAGCACg -3' miRNA: 3'- cgaAGGUUUaaaGGC-AGUGCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 134785 | 0.69 | 0.999991 |
Target: 5'- -aUUCUAGAaacgaacUCCGUUACGCAaaACGCa -3' miRNA: 3'- cgAAGGUUUaa-----AGGCAGUGCGU--UGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 97210 | 0.69 | 0.999987 |
Target: 5'- cGCgaCCGGGgcgUCCGgaaCACGgGACACa -3' miRNA: 3'- -CGaaGGUUUaa-AGGCa--GUGCgUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 115156 | 0.69 | 0.999987 |
Target: 5'- --aUCuCAcGUcUCCGUC-CGCAACGCa -3' miRNA: 3'- cgaAG-GUuUAaAGGCAGuGCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 252710 | 0.69 | 0.999983 |
Target: 5'- --aUUCGAucggCCGUCGCGCGGCGu -3' miRNA: 3'- cgaAGGUUuaaaGGCAGUGCGUUGUg -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 158482 | 0.69 | 0.999973 |
Target: 5'- aCUUCaucuccgCCGUCGCGCAGCuCa -3' miRNA: 3'- cGAAGguuuaaaGGCAGUGCGUUGuG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 70178 | 0.7 | 0.999968 |
Target: 5'- cGCUU-CAGAUguccauaCCG-CGCGCAACGCu -3' miRNA: 3'- -CGAAgGUUUAaa-----GGCaGUGCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 107257 | 0.7 | 0.999968 |
Target: 5'- cGUUUCCAAAg--UCGUCAuUGCGGCGg -3' miRNA: 3'- -CGAAGGUUUaaaGGCAGU-GCGUUGUg -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 205062 | 0.7 | 0.999957 |
Target: 5'- aGCUgUCCAGAUUcUCCGgacUCACggGCGACAUu -3' miRNA: 3'- -CGA-AGGUUUAA-AGGC---AGUG--CGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 263756 | 0.7 | 0.999943 |
Target: 5'- -aUUCCAGuacucuAUUaCCuUCGCGCAGCACg -3' miRNA: 3'- cgAAGGUU------UAAaGGcAGUGCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 259912 | 0.7 | 0.999925 |
Target: 5'- uGUUUgcUCAAGUUgCCGgcgcCGCGCAACACg -3' miRNA: 3'- -CGAA--GGUUUAAaGGCa---GUGCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 156425 | 0.7 | 0.999903 |
Target: 5'- gGCU-CCGAuAUUUUCGUC-CGCAAUGCc -3' miRNA: 3'- -CGAaGGUU-UAAAGGCAGuGCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 205140 | 0.7 | 0.999903 |
Target: 5'- aCUUCCGcgca-CCGUCGCGCcguACACc -3' miRNA: 3'- cGAAGGUuuaaaGGCAGUGCGu--UGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 61758 | 0.71 | 0.999874 |
Target: 5'- uCUUCCAGAcaucggCCGUCcuCGCGGCAUu -3' miRNA: 3'- cGAAGGUUUaaa---GGCAGu-GCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 249523 | 0.72 | 0.999201 |
Target: 5'- aGCgUCCAAucg-CCGUCggccuugACGCGGCGCa -3' miRNA: 3'- -CGaAGGUUuaaaGGCAG-------UGCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 3028 | 0.74 | 0.996066 |
Target: 5'- cGCcUCCAAGUUUCCcaugCAUGCGGCGa -3' miRNA: 3'- -CGaAGGUUUAAAGGca--GUGCGUUGUg -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 309053 | 0.75 | 0.992866 |
Target: 5'- aGCUUUgAAGUgagccuggCCGUCGUGCAGCACg -3' miRNA: 3'- -CGAAGgUUUAaa------GGCAGUGCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 39739 | 0.76 | 0.985759 |
Target: 5'- cGCUUUCAAuGUUUCCGUCgaagaccuuguugaACGCcGCACg -3' miRNA: 3'- -CGAAGGUU-UAAAGGCAG--------------UGCGuUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 161854 | 0.78 | 0.963852 |
Target: 5'- --aUCCAccuUUUCCGUCACGUcGCGCa -3' miRNA: 3'- cgaAGGUuu-AAAGGCAGUGCGuUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 25831 | 1.15 | 0.026853 |
Target: 5'- aGCUUCCAAAUUUCCGUCACGCAACACg -3' miRNA: 3'- -CGAAGGUUUAAAGGCAGUGCGUUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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