Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10295 | 3' | -46 | NC_002687.1 | + | 235113 | 0.66 | 1 |
Target: 5'- uGCUUCCGGGg--CCGUC-CGgGAUg- -3' miRNA: 3'- -CGAAGGUUUaaaGGCAGuGCgUUGug -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 301824 | 0.66 | 1 |
Target: 5'- gGCUUCCAugggcuUUUCCcuuagCACGUcgagAACGCa -3' miRNA: 3'- -CGAAGGUuu----AAAGGca---GUGCG----UUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 32700 | 0.66 | 1 |
Target: 5'- -aUUCUgucaAAAUUgggguaGUCGCGCAGCACg -3' miRNA: 3'- cgAAGG----UUUAAagg---CAGUGCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 297912 | 0.67 | 1 |
Target: 5'- gGCUUCgGcuccagCCG-CACGCAACAa -3' miRNA: 3'- -CGAAGgUuuaaa-GGCaGUGCGUUGUg -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 301503 | 0.66 | 1 |
Target: 5'- uGC-UCCAAGacagagcgUUCCGUCACG-GACAg -3' miRNA: 3'- -CGaAGGUUUa-------AAGGCAGUGCgUUGUg -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 333004 | 0.67 | 0.999999 |
Target: 5'- --aUCgCGAGcUUCCuGUUGCGCAACGCc -3' miRNA: 3'- cgaAG-GUUUaAAGG-CAGUGCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 121493 | 0.67 | 0.999999 |
Target: 5'- -aUUCCGAGggUUCCGcCACGgGcCACg -3' miRNA: 3'- cgAAGGUUUa-AAGGCaGUGCgUuGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 302000 | 0.67 | 0.999999 |
Target: 5'- aGUUUCCAAAgaUCCcagGUUuuGCGCGAgGCa -3' miRNA: 3'- -CGAAGGUUUaaAGG---CAG--UGCGUUgUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 333678 | 0.67 | 0.999999 |
Target: 5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3' miRNA: 3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 239437 | 0.67 | 0.999999 |
Target: 5'- cCUUCCc-GUUUCCcUCaaucaACGCGACGCa -3' miRNA: 3'- cGAAGGuuUAAAGGcAG-----UGCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 279532 | 0.67 | 0.999999 |
Target: 5'- cGCUUCCGGcaccgCCGcUGCGCAcGCGCu -3' miRNA: 3'- -CGAAGGUUuaaa-GGCaGUGCGU-UGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 1677 | 0.67 | 0.999999 |
Target: 5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3' miRNA: 3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 1151 | 0.67 | 0.999999 |
Target: 5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3' miRNA: 3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 624 | 0.67 | 0.999999 |
Target: 5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3' miRNA: 3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 176111 | 0.67 | 0.999999 |
Target: 5'- aCUUCCAAucUUUCCGuauucgaugacgUCAUGCccuGGCACg -3' miRNA: 3'- cGAAGGUUu-AAAGGC------------AGUGCG---UUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 334241 | 0.67 | 0.999999 |
Target: 5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3' miRNA: 3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 334803 | 0.67 | 0.999999 |
Target: 5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3' miRNA: 3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 262287 | 0.67 | 0.999999 |
Target: 5'- aCUUCgCGGAUga-UGUCuCGCGACACa -3' miRNA: 3'- cGAAG-GUUUAaagGCAGuGCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 32487 | 0.68 | 0.999998 |
Target: 5'- ---aUCGAGUUUUCGUaCACGCGACu- -3' miRNA: 3'- cgaaGGUUUAAAGGCA-GUGCGUUGug -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 176615 | 0.68 | 0.999998 |
Target: 5'- cGCUUCCGAAcaguagauacaaGcUCACGUAACACa -3' miRNA: 3'- -CGAAGGUUUaaagg-------C-AGUGCGUUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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