Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10295 | 3' | -46 | NC_002687.1 | + | 251771 | 0.66 | 1 |
Target: 5'- -gUUCCAAAcauacacucucgauUUUCCGgugCGCGCGucCACu -3' miRNA: 3'- cgAAGGUUU--------------AAAGGCa--GUGCGUu-GUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 93576 | 0.66 | 1 |
Target: 5'- cGCcgUCGAcuAUUUCCGUCAUcaCAACACc -3' miRNA: 3'- -CGaaGGUU--UAAAGGCAGUGc-GUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 61597 | 0.66 | 1 |
Target: 5'- gGCUUUCGGca-UCCGgCACGUAcACACa -3' miRNA: 3'- -CGAAGGUUuaaAGGCaGUGCGU-UGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 297912 | 0.67 | 1 |
Target: 5'- gGCUUCgGcuccagCCG-CACGCAACAa -3' miRNA: 3'- -CGAAGgUuuaaa-GGCaGUGCGUUGUg -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 35108 | 0.66 | 1 |
Target: 5'- ---aCCAuggaUUCCGUCAgGCuuuGCGCg -3' miRNA: 3'- cgaaGGUuua-AAGGCAGUgCGu--UGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 20977 | 0.66 | 1 |
Target: 5'- uGCUcUCCGAAggcgCCG--AUGCAACACu -3' miRNA: 3'- -CGA-AGGUUUaaa-GGCagUGCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 22172 | 0.67 | 1 |
Target: 5'- aGCaUUCAGGcagugUCCGUCGCGCAuUAUg -3' miRNA: 3'- -CGaAGGUUUaa---AGGCAGUGCGUuGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 313012 | 0.66 | 1 |
Target: 5'- uCUUCCucgaccgCgGUCACGCGAC-Cg -3' miRNA: 3'- cGAAGGuuuaaa-GgCAGUGCGUUGuG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 334803 | 0.67 | 0.999999 |
Target: 5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3' miRNA: 3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 247451 | 0.66 | 1 |
Target: 5'- gGC-UCCGAAcuucugCCGUCuCGCGuccGCACa -3' miRNA: 3'- -CGaAGGUUUaaa---GGCAGuGCGU---UGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 110407 | 0.66 | 1 |
Target: 5'- ---aCCAAAUc-CCGUCGuCGaCAGCACa -3' miRNA: 3'- cgaaGGUUUAaaGGCAGU-GC-GUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 128060 | 0.66 | 1 |
Target: 5'- aGCUUUCuuAUUUCCGagAgGC-ACGCu -3' miRNA: 3'- -CGAAGGuuUAAAGGCagUgCGuUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 259039 | 0.66 | 1 |
Target: 5'- -aUUCCAcgcucaUCCGcCGCGCGACGa -3' miRNA: 3'- cgAAGGUuuaa--AGGCaGUGCGUUGUg -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 83310 | 0.67 | 1 |
Target: 5'- aGCUUCUAcggcaucCCGUCGgcuaGCGACACc -3' miRNA: 3'- -CGAAGGUuuaaa--GGCAGUg---CGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 268673 | 0.67 | 1 |
Target: 5'- uCUUCUcucaccaCGUCGCGUAGCACu -3' miRNA: 3'- cGAAGGuuuaaagGCAGUGCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 334241 | 0.67 | 0.999999 |
Target: 5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3' miRNA: 3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 301503 | 0.66 | 1 |
Target: 5'- uGC-UCCAAGacagagcgUUCCGUCACG-GACAg -3' miRNA: 3'- -CGaAGGUUUa-------AAGGCAGUGCgUUGUg -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 279532 | 0.67 | 0.999999 |
Target: 5'- cGCUUCCGGcaccgCCGcUGCGCAcGCGCu -3' miRNA: 3'- -CGAAGGUUuaaa-GGCaGUGCGU-UGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 25831 | 1.15 | 0.026853 |
Target: 5'- aGCUUCCAAAUUUCCGUCACGCAACACg -3' miRNA: 3'- -CGAAGGUUUAAAGGCAGUGCGUUGUG- -5' |
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10295 | 3' | -46 | NC_002687.1 | + | 1677 | 0.67 | 0.999999 |
Target: 5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3' miRNA: 3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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