miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10295 3' -46 NC_002687.1 + 161854 0.78 0.963852
Target:  5'- --aUCCAccuUUUCCGUCACGUcGCGCa -3'
miRNA:   3'- cgaAGGUuu-AAAGGCAGUGCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 334241 0.67 0.999999
Target:  5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3'
miRNA:   3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 22172 0.67 1
Target:  5'- aGCaUUCAGGcagugUCCGUCGCGCAuUAUg -3'
miRNA:   3'- -CGaAGGUUUaa---AGGCAGUGCGUuGUG- -5'
10295 3' -46 NC_002687.1 + 110407 0.66 1
Target:  5'- ---aCCAAAUc-CCGUCGuCGaCAGCACa -3'
miRNA:   3'- cgaaGGUUUAaaGGCAGU-GC-GUUGUG- -5'
10295 3' -46 NC_002687.1 + 205140 0.7 0.999903
Target:  5'- aCUUCCGcgca-CCGUCGCGCcguACACc -3'
miRNA:   3'- cGAAGGUuuaaaGGCAGUGCGu--UGUG- -5'
10295 3' -46 NC_002687.1 + 156425 0.7 0.999903
Target:  5'- gGCU-CCGAuAUUUUCGUC-CGCAAUGCc -3'
miRNA:   3'- -CGAaGGUU-UAAAGGCAGuGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 70178 0.7 0.999968
Target:  5'- cGCUU-CAGAUguccauaCCG-CGCGCAACGCu -3'
miRNA:   3'- -CGAAgGUUUAaa-----GGCaGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 107257 0.7 0.999968
Target:  5'- cGUUUCCAAAg--UCGUCAuUGCGGCGg -3'
miRNA:   3'- -CGAAGGUUUaaaGGCAGU-GCGUUGUg -5'
10295 3' -46 NC_002687.1 + 134785 0.69 0.999991
Target:  5'- -aUUCUAGAaacgaacUCCGUUACGCAaaACGCa -3'
miRNA:   3'- cgAAGGUUUaa-----AGGCAGUGCGU--UGUG- -5'
10295 3' -46 NC_002687.1 + 333678 0.67 0.999999
Target:  5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3'
miRNA:   3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 333004 0.67 0.999999
Target:  5'- --aUCgCGAGcUUCCuGUUGCGCAACGCc -3'
miRNA:   3'- cgaAG-GUUUaAAGG-CAGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 115156 0.69 0.999987
Target:  5'- --aUCuCAcGUcUCCGUC-CGCAACGCa -3'
miRNA:   3'- cgaAG-GUuUAaAGGCAGuGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 309053 0.75 0.992866
Target:  5'- aGCUUUgAAGUgagccuggCCGUCGUGCAGCACg -3'
miRNA:   3'- -CGAAGgUUUAaa------GGCAGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 121493 0.67 0.999999
Target:  5'- -aUUCCGAGggUUCCGcCACGgGcCACg -3'
miRNA:   3'- cgAAGGUUUa-AAGGCaGUGCgUuGUG- -5'
10295 3' -46 NC_002687.1 + 3028 0.74 0.996066
Target:  5'- cGCcUCCAAGUUUCCcaugCAUGCGGCGa -3'
miRNA:   3'- -CGaAGGUUUAAAGGca--GUGCGUUGUg -5'
10295 3' -46 NC_002687.1 + 158482 0.69 0.999973
Target:  5'- aCUUCaucuccgCCGUCGCGCAGCuCa -3'
miRNA:   3'- cGAAGguuuaaaGGCAGUGCGUUGuG- -5'
10295 3' -46 NC_002687.1 + 302000 0.67 0.999999
Target:  5'- aGUUUCCAAAgaUCCcagGUUuuGCGCGAgGCa -3'
miRNA:   3'- -CGAAGGUUUaaAGG---CAG--UGCGUUgUG- -5'
10295 3' -46 NC_002687.1 + 334803 0.67 0.999999
Target:  5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3'
miRNA:   3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 61758 0.71 0.999874
Target:  5'- uCUUCCAGAcaucggCCGUCcuCGCGGCAUu -3'
miRNA:   3'- cGAAGGUUUaaa---GGCAGu-GCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 263756 0.7 0.999943
Target:  5'- -aUUCCAGuacucuAUUaCCuUCGCGCAGCACg -3'
miRNA:   3'- cgAAGGUU------UAAaGGcAGUGCGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.