miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10295 3' -46 NC_002687.1 + 259912 0.7 0.999925
Target:  5'- uGUUUgcUCAAGUUgCCGgcgcCGCGCAACACg -3'
miRNA:   3'- -CGAA--GGUUUAAaGGCa---GUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 1151 0.67 0.999999
Target:  5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3'
miRNA:   3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 1677 0.67 0.999999
Target:  5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3'
miRNA:   3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 279532 0.67 0.999999
Target:  5'- cGCUUCCGGcaccgCCGcUGCGCAcGCGCu -3'
miRNA:   3'- -CGAAGGUUuaaa-GGCaGUGCGU-UGUG- -5'
10295 3' -46 NC_002687.1 + 32487 0.68 0.999998
Target:  5'- ---aUCGAGUUUUCGUaCACGCGACu- -3'
miRNA:   3'- cgaaGGUUUAAAGGCA-GUGCGUUGug -5'
10295 3' -46 NC_002687.1 + 176615 0.68 0.999998
Target:  5'- cGCUUCCGAAcaguagauacaaGcUCACGUAACACa -3'
miRNA:   3'- -CGAAGGUUUaaagg-------C-AGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 97210 0.69 0.999987
Target:  5'- cGCgaCCGGGgcgUCCGgaaCACGgGACACa -3'
miRNA:   3'- -CGaaGGUUUaa-AGGCa--GUGCgUUGUG- -5'
10295 3' -46 NC_002687.1 + 252710 0.69 0.999983
Target:  5'- --aUUCGAucggCCGUCGCGCGGCGu -3'
miRNA:   3'- cgaAGGUUuaaaGGCAGUGCGUUGUg -5'
10295 3' -46 NC_002687.1 + 205062 0.7 0.999957
Target:  5'- aGCUgUCCAGAUUcUCCGgacUCACggGCGACAUu -3'
miRNA:   3'- -CGA-AGGUUUAA-AGGC---AGUG--CGUUGUG- -5'
10295 3' -46 NC_002687.1 + 624 0.67 0.999999
Target:  5'- aGCagCCAAAUggcaaUuuGUCugGCuACACa -3'
miRNA:   3'- -CGaaGGUUUAa----AggCAGugCGuUGUG- -5'
10295 3' -46 NC_002687.1 + 176111 0.67 0.999999
Target:  5'- aCUUCCAAucUUUCCGuauucgaugacgUCAUGCccuGGCACg -3'
miRNA:   3'- cGAAGGUUu-AAAGGC------------AGUGCG---UUGUG- -5'
10295 3' -46 NC_002687.1 + 262287 0.67 0.999999
Target:  5'- aCUUCgCGGAUga-UGUCuCGCGACACa -3'
miRNA:   3'- cGAAG-GUUUAaagGCAGuGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 301824 0.66 1
Target:  5'- gGCUUCCAugggcuUUUCCcuuagCACGUcgagAACGCa -3'
miRNA:   3'- -CGAAGGUuu----AAAGGca---GUGCG----UUGUG- -5'
10295 3' -46 NC_002687.1 + 235113 0.66 1
Target:  5'- uGCUUCCGGGg--CCGUC-CGgGAUg- -3'
miRNA:   3'- -CGAAGGUUUaaaGGCAGuGCgUUGug -5'
10295 3' -46 NC_002687.1 + 46332 0.66 1
Target:  5'- uGCUcUUCAAucgUCCauGUCACuGCGACACc -3'
miRNA:   3'- -CGA-AGGUUuaaAGG--CAGUG-CGUUGUG- -5'
10295 3' -46 NC_002687.1 + 247771 0.66 1
Target:  5'- ---gCCAAGUUUUac-CGCGCGGCGCg -3'
miRNA:   3'- cgaaGGUUUAAAGgcaGUGCGUUGUG- -5'
10295 3' -46 NC_002687.1 + 256519 0.66 1
Target:  5'- cGCUcUCCGAGUagaCGUCGCG--GCACa -3'
miRNA:   3'- -CGA-AGGUUUAaagGCAGUGCguUGUG- -5'
10295 3' -46 NC_002687.1 + 301503 0.66 1
Target:  5'- uGC-UCCAAGacagagcgUUCCGUCACG-GACAg -3'
miRNA:   3'- -CGaAGGUUUa-------AAGGCAGUGCgUUGUg -5'
10295 3' -46 NC_002687.1 + 12984 0.67 1
Target:  5'- aUUUCUAAAUUUCCcccaucauGUCGCGCcuCAUu -3'
miRNA:   3'- cGAAGGUUUAAAGG--------CAGUGCGuuGUG- -5'
10295 3' -46 NC_002687.1 + 239437 0.67 0.999999
Target:  5'- cCUUCCc-GUUUCCcUCaaucaACGCGACGCa -3'
miRNA:   3'- cGAAGGuuUAAAGGcAG-----UGCGUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.